Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1330 ATGCCAGACGGAGAATCCTCTACCCCTGCTTCAACCATCACTCACCATTTACGGTCTCTGAATCTCTCAGAACCCAGAAATCATGAGGATGAGTACCCGGTTAAGAAAGATCCTAGGAAAATTGCTAGAAAGTATCAATTGGAGCTGTGTAAAAAAGCATTGGAGGAAAATATAATCGTGTATTTGGGCACAGGTTGCGGGAAGACACACATTGCAGTGCTGCTTATGCATGAGATGGGTCATTTGATACGGAAACCCCAGAAAGACATATGTGTCTTTCTTGCCCCTACTGTGGCTTTAGTTCATCAGCAAGCGAAGGTTATAGAAGAATCTACTGATTTTAAGGTTGGAATTTACTGTGGGAGTTCCAAGCGCTTGAAACGTCATCATGATTGGGAGCAGGAGATTGAACAATATGAGGTTCTGGTTATGACCCCGCAGATATTACTTCACAACTTGTCTCATTGTTTCATGAAGATGGAGATGATCGCACTTTTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATCCTTATGCGTCAGTCATGAAAGTCTTTTACAAAAACAACTCAACAAAGGTTCCCCGTATATTTGGCATGACTGCTTCCCCAGTTGTTGGAAAAGGTTCTTCTAGTGAAGCAAATCTACCAAAAAGCATCAACAGTCTTGAACATATGCTTGATGCTAAGGTATACTCAGTTGAAGACCAGGAATTGCAATCTTTTGTAACCACTCCTGTGATTACTATACATCATTATGGTTCAACTGAAAATAGGCAAACTAATCTGTACACGACTTACTATGCCAAACTTGAGGAGATTAAACGTCAGTGCACAGCAATCCTCGGTAGGAATGTAGAGGATCACCAGAAGCGAATGAACACAAAGAAACTTCTGAACCGGATGCATGATAATGTGCTTTTCTGCTTGGGTAGTCTTGGCATTTGGGGAGCATTGCAAGCTAGTCATATTCTTTTGAGTGGTGATCATTCTGAGAGGCATGAATTAGTGGAGGCAGAAGGATATTCAAGTGATGATTCTCTGTTTGATAAATATCTAGCTCAGGCAGCTGAACTCTTCACTTCACAATGTATGATTGGTGGCAGTGTATCTGATCTATCTTCTGTGGAAACACTGACAGAGCCCTTTTTCTCATCAAAGCTTTTACGCCTCATTGGGATACTGTCCAACTTTAGGATGCAAGAAAACATGAAATGTATAATATTTGTAAATAGAATTGTGACTGCAAGGTCCCTGTCATACATACTACAGAAGCTCAAGCTTCTAAGACAATGGAAGAGTGACTTTCTAGTAGGAGTCCATGCCGGACTGAGGAGTATGTCACGAAAGACCATGAACATCATTGTTGACAAGTTTCGCTCTGGAGAGTTGAATCTATTGGTCGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTTGTCATACGATTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGGGGCCGTGCACGTATGCCTCAGTCAGAATATGCTTTTTTGGTGGACAGTGGCAATAAGAAGGAGCTTGACTTAATTGAAGGTTTTGAGAAAGATGAATACCGGATGAATATGGAAGTTTCTTCACGAACATCCAATGACATACACAGCATCCCCAATGAAAGAATATTCCATGTTGATTCATCTGGTGCTTCTGTGAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTACTTTGACCCCAAACCAAGTTTTTTTTACTTTGATGATTTAGGAGGAACTGTCTGCCACATAACTTTGCCTGCCAATGCTCCAATACACCAAATTGTTAGTACCCCACAGTTGTCTATGGAAGATGCCAAAAGGGATGCTTGCCTGAAAGCAATCGAAAATTTGTACAAATTAGGTGCTTTAAGTGATTTTCTCTTGCCAAATCAAAATGGTTCAAAGCCAGAGGAGCAGGTTTTGAGCTCTTCCAATTCAGATGGATGTGAAGATGAGGTTTCAAGAGGAGAATTATATGAGATGCTAATTCCTGCTGCCTTTCGGCAGTCGTGGGTAAATGAGGAGAAAATTGTTCATCTCAACTCTTACTACTTGAAATTTTGCCCATGTCCAGAGGATAGGGTCTACAAAAAGTTTGGCTTATTTATCATGACTCGTCTTCCAGTGGAGGCTGAGAAACTGGAACTTGATCTTCATCTTGCCCATGGTAGATCTGTGATGTCAAAATTTGTTCCACTTGGAGTTGTAGGATTTGACAGAGATGAGATTAAGATGGCAGAGAATTTTCAAGAAATGTTCCTCAAAATTGTTCTTGATCGATTGGAATTTATTTCTGAGTTTGTACCCTTGGGTAAGGGTGAATCTCACAGTAGCACATCAACCTTTTACCTTTTGCTTCCAGTCATATTGCAAGAATATGAAAACATCATGACAGTAGATTGGAAGACAGTGAGGCGATGCCTTTCTTCGTCAATTTTCAGGCATCCAGCAGATACTGTGGATCAAAAAGTTTTCCATTTGGATATTCACCTGCGACTTGCCAATGGTTACAGAAGTGTGACGGATATTGAGAATAGTTTAGTGTATGTACCACATAAGAAGTCATTTTATTTTGTCACTAATGTTATCTATTTAAAGAATGGATCCAGTCCTTATAAAGATTCAGGCACTTCAAGCTATGTGGACCACTTCATTGAAAAGTATTCCATTCATCTCAAATTCCCTGAACAACCACTTTTGCATGCAAAACCTCTCTTCAATTTGCACAACCTCCTACACAACCGAAAGCATGAGGATACAGAAGCGGATGAGCTGAAGGAGTACTTCATTGATTTGCCACCTGAGGTGTGTGAACTGAAAATAGTAGGTTTTTCAAAGGATATTGGTAGTTCCATATCTTTGCTACCCTCAATTATGCATCGTCTTGGAAACTTGTTGGTTGCTATTGAGCTGAAGCACATGTTATCATCTTTCTTCCCAGAGGCAGCTGAAATTAAAGCCCTTACAGTTCTAGAGGCTCTCACCACCGAGAGGTGTCTGGAGCGCCTTTCCCTTGAAAGATTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGCTGTTGCGCGCCATTTTTTCCTCATGAATGACAACTTTCATGAAGGTGACCTTACAGGAAGCCGTTCGAATGCCGTGAATAATTCCAATTTGTTTAAGTTGGCTGTTAGGCATAATTTGCAGGTCTACATACGCGATCAGGCATTGGATCCCTCCCTGTTCTATGCATTAGGCCGTCCTTGCCCAATAGTTTGTGACAAGGAAACTGAAGAAAGCGTACACTTAAGTTTAAATTCTGTCAAGGAGCAAGGAAGTGCAACTGAAGTCCGATGCAATAAAAATCACCACTGGTTACATCGGAAAACAATTTCTGATGTGGTTGAAGCTCTGGTTGGAGCATTCTTAGTTGACAGTGGCTTTAAAGCTGCAGTTGCATTTCTTACATGGATTGGCATACCAATCAATTTTGAGGCCTCACAAGTGGTTAATGCTTGCTTGGGAAGTGCTGGCTATGTTCCTCTCTCTGCAGATGTAGACATTCGTTCACTTGAAGATAAGTTAGGATATCACTTTGTTCATAAGGGTCTGCTTATCCAGGCATTTGTACATCCTTCTTATAATAAGCATGGTGGGGGCTGCTATCAGCGATTGGAGTTTCTTGGAGATGCTGTGTTGGATTATTTGATTAGTTCATACCTATACTCAGCTTATCCCAAGTTAAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCGGTTAACAATAAGGCATTTGCCTGTGTTGCGGTAGATCACAATTTTAATGAATTTCTTTTAAGTGATTCAAGTGGACTGTCTGAGGCAATTAAAAAGTATGTGGACTATATTAGAAGACCTAAGTCACATAGTGGTGTCACTCAAGGGCCAAAATGTCCGAAGGCACTGGGTGACTTGGTGGAATCTTGTGTTGGTGCCATTCTTCTTGATTCAGGGTTCAATTTGAACAAAGTTTGGGATGTTATGACTTCCTTCTTGGACCCAATCATGAAATTCTCATCGACATTGCAGCTTAGTCCTGTTAGGGATTTGCAAGAACTTTGTCAATCTCATAATTTGGATTTGCAGTTTCAGACTACAAAACTGACTAAAATGTTTTCGGTTGAAGCCAAGGTGACTCGAGATGGTGTATCTAAAACCGCTTCCGCAACCAGCCAAAGTATAAAAGAGGCTTCTAAAGTTGCTTCACAGCTACTATTTTCATACTTCAAGGATCAAGGCTGGAAACCAAAGTCAAAACCTTTGGAAGAAGTTTTAAAAACAACTTATAAGATGGAACCAAAACTTATTGGCTATGATGAAACCCCAATTGATGTAACAGCTGCTAATACCATTGAGCACATAATGGTTAATGGAGATCCATACAGCAAGTCTAACCCAGTAATTCGCCCCATCCGTGATGTAATTAATATGTCCACCCCAAGTGCGAAACCTGTTGGCCAACGGCTTCAATCTTCTCCTAAGGAACGGCTTAGTGAATCCATTGAGACTAATGGTTGTGACAAAGACTCATTGAGGACAGATTGTTTGAACAAAGGAACAGCAAGATCTCGATTGTATGAATTCTGTGCTGGCAATTGCTGGAAACCTCCATTATTTGAATGCTGCAAAGAAGAGGGACCAGACCACCTGAAGTTATTCACTTTCAAGGTGACATTAGAGATAGAAGAAGCCCCAGATATGCTTTTTTTGTTCATTGGGGAACCTAAATCAAAGAAGAAAGATGCAGCAGAGAGTGCAGCTGAAGGTGCATTTTGGTACCTGCATCAAGAAGGTTACCTGCCTAAGGGTAATTGA 4908 0.4075 MPDGESSTPASTITHHLRSLNLSEPRNHEDEYPVKKDPRKIARKYQLELCKKALEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPQKDICVFLAPTVALVHQQAKVIEESTDFKVGIYCGSSKRLKRHHDWEQEIEQYEVLVMTPQILLHNLSHCFMKMEMIALLIFDECHHAQVKSNHPYASVMKVFYKNNSTKVPRIFGMTASPVVGKGSSSEANLPKSINSLEHMLDAKVYSVEDQELQSFVTTPVITIHHYGSTENRQTNLYTTYYAKLEEIKRQCTAILGRNVEDHQKRMNTKKLLNRMHDNVLFCLGSLGIWGALQASHILLSGDHSERHELVEAEGYSSDDSLFDKYLAQAAELFTSQCMIGGSVSDLSSVETLTEPFFSSKLLRLIGILSNFRMQENMKCIIFVNRIVTARSLSYILQKLKLLRQWKSDFLVGVHAGLRSMSRKTMNIIVDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKELDLIEGFEKDEYRMNMEVSSRTSNDIHSIPNERIFHVDSSGASVSSGYSISLLHQYCSKLPHDEYFDPKPSFFYFDDLGGTVCHITLPANAPIHQIVSTPQLSMEDAKRDACLKAIENLYKLGALSDFLLPNQNGSKPEEQVLSSSNSDGCEDEVSRGELYEMLIPAAFRQSWVNEEKIVHLNSYYLKFCPCPEDRVYKKFGLFIMTRLPVEAEKLELDLHLAHGRSVMSKFVPLGVVGFDRDEIKMAENFQEMFLKIVLDRLEFISEFVPLGKGESHSSTSTFYLLLPVILQEYENIMTVDWKTVRRCLSSSIFRHPADTVDQKVFHLDIHLRLANGYRSVTDIENSLVYVPHKKSFYFVTNVIYLKNGSSPYKDSGTSSYVDHFIEKYSIHLKFPEQPLLHAKPLFNLHNLLHNRKHEDTEADELKEYFIDLPPEVCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELKHMLSSFFPEAAEIKALTVLEALTTERCLERLSLERFEVLGDAFLKFAVARHFFLMNDNFHEGDLTGSRSNAVNNSNLFKLAVRHNLQVYIRDQALDPSLFYALGRPCPIVCDKETEESVHLSLNSVKEQGSATEVRCNKNHHWLHRKTISDVVEALVGAFLVDSGFKAAVAFLTWIGIPINFEASQVVNACLGSAGYVPLSADVDIRSLEDKLGYHFVHKGLLIQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLISSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDHNFNEFLLSDSSGLSEAIKKYVDYIRRPKSHSGVTQGPKCPKALGDLVESCVGAILLDSGFNLNKVWDVMTSFLDPIMKFSSTLQLSPVRDLQELCQSHNLDLQFQTTKLTKMFSVEAKVTRDGVSKTASATSQSIKEASKVASQLLFSYFKDQGWKPKSKPLEEVLKTTYKMEPKLIGYDETPIDVTAANTIEHIMVNGDPYSKSNPVIRPIRDVINMSTPSAKPVGQRLQSSPKERLSESIETNGCDKDSLRTDCLNKGTARSRLYEFCAGNCWKPPLFECCKEEGPDHLKLFTFKVTLEIEEAPDMLFLFIGEPKSKKKDAAESAAEGAFWYLHQEGYLPKGN 1635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1330 1635 Pfam Ribonuclease III domain 1240 1349 IPR000999 GO:0004525|GO:0006396
Lal19g1330 1635 Pfam Ribonuclease III domain 1033 1164 IPR000999 GO:0004525|GO:0006396
Lal19g1330 1635 ProSitePatterns Ribonuclease III family signature. 1240 1248 IPR000999 GO:0004525|GO:0006396
Lal19g1330 1635 PANTHER DICER-RELATED 38 1629 - -
Lal19g1330 1635 Gene3D - 382 545 IPR027417 -
Lal19g1330 1635 MobiDBLite consensus disorder prediction 1510 1532 - -
Lal19g1330 1635 Gene3D Ribonuclease III domain 1012 1175 IPR036389 GO:0004525|GO:0006396
Lal19g1330 1635 SMART riboneu5 1220 1372 IPR000999 GO:0004525|GO:0006396
Lal19g1330 1635 SMART riboneu5 1015 1185 IPR000999 GO:0004525|GO:0006396
Lal19g1330 1635 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1552 1625 - -
Lal19g1330 1635 ProSiteProfiles PAZ domain profile. 869 968 IPR003100 GO:0005515
Lal19g1330 1635 Pfam PAZ domain 869 989 IPR003100 GO:0005515
Lal19g1330 1635 Gene3D Ribonuclease III domain 1202 1376 IPR036389 GO:0004525|GO:0006396
Lal19g1330 1635 MobiDBLite consensus disorder prediction 1511 1530 - -
Lal19g1330 1635 SUPERFAMILY dsRNA-binding domain-like 1551 1631 - -
Lal19g1330 1635 Gene3D - 40 276 IPR027417 -
Lal19g1330 1635 SMART DRBM_3 1377 1441 IPR014720 -
Lal19g1330 1635 SMART DRBM_3 1552 1626 IPR014720 -
Lal19g1330 1635 SUPERFAMILY PAZ domain 863 966 IPR036085 GO:0005515
Lal19g1330 1635 SUPERFAMILY RNase III domain-like 1203 1368 IPR036389 GO:0004525|GO:0006396
Lal19g1330 1635 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1551 1627 IPR014720 -
Lal19g1330 1635 SMART helicmild6 420 510 IPR001650 -
Lal19g1330 1635 Gene3D - 1558 1627 - -
Lal19g1330 1635 ProSiteProfiles Ribonuclease III family domain profile. 1205 1349 IPR000999 GO:0004525|GO:0006396
Lal19g1330 1635 CDD RIBOc 1221 1371 IPR000999 GO:0004525|GO:0006396
Lal19g1330 1635 CDD RIBOc 1018 1179 IPR000999 GO:0004525|GO:0006396
Lal19g1330 1635 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 225 IPR014001 -
Lal19g1330 1635 MobiDBLite consensus disorder prediction 1 20 - -
Lal19g1330 1635 SUPERFAMILY dsRNA-binding domain-like 1331 1440 - -
Lal19g1330 1635 SMART ultradead3 38 240 IPR014001 -
Lal19g1330 1635 Pfam DEAD/DEAH box helicase 44 189 IPR011545 GO:0003676|GO:0005524
Lal19g1330 1635 ProSiteProfiles Ribonuclease III family domain profile. 1019 1164 IPR000999 GO:0004525|GO:0006396
Lal19g1330 1635 SUPERFAMILY RNase III domain-like 1017 1179 IPR036389 GO:0004525|GO:0006396
Lal19g1330 1635 Gene3D paz domain 864 966 - -
Lal19g1330 1635 SMART PAZ_2_a_3 849 994 IPR003100 GO:0005515
Lal19g1330 1635 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 547 IPR001650 -
Lal19g1330 1635 CDD DEXHc_dicer 40 239 - -
Lal19g1330 1635 Pfam Dicer dimerisation domain 574 658 - -
Lal19g1330 1635 PANTHER DICER-LIKE PROTEIN 4 38 1629 - -
Lal19g1330 1635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 526 IPR027417 -
Lal19g1330 1635 Gene3D Dicer dimerisation domain 570 665 IPR038248 -
Lal19g1330 1635 Pfam Helicase conserved C-terminal domain 394 508 IPR001650 -
Lal19g1330 1635 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 574 664 IPR005034 GO:0016891
Lal19g1330 1635 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1330 Lal-Chr19 16234288 16250216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1330 408 541 Eukaryotic Initiation Factors Gene Family AT3G19760 31.655 1.68e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1330 K11592 - gmx:100818702 2586.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1330 19 16234288 16250216 Lal19g1330 19 16234288 16250216 ECH