Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1328 ATGGCGGAGAACCAAAAGGGTAGTAGTGATTTCATGGATGAAGATGGTGGAGACCGTTTTCCAGTGGGTATGCGTGTTCTAGCTGTTGATGATGACCGAACTTGTCTCAAAGTGTTGGAGAACATGCTTCGGAGTTGCCAGTATCATGTTACTACAACTACGAATTCAATTAAGGCGCTAGAAATGTTGAGGATGAACAGAAATAAGTTTGATCTTGTTATCAGTGATGTAAAAATGCCAGACATGGATGGATTCAAGCTTCTTGAGCTGGTGGGACTGGAAATGGACCTACCTGTTATTATGTTGTCAGGACACAAGGATAAGGAGCTGGTGATGAAGGGTGTTATACATGGTGCATGTGACTATTTGCTGAAACCTGTCCGAATCGAAGAGCTGCAGAATATATGGCAACATGTAGTTCGGAAGAAGATTGATCGCAAGGATCACAGTAAGGCTTCTGCCAGTATAGAGGAGACTAGCAATATGGCTGGGGAAGGTAGTCATGGCATTGCATCAGAAAATAATTCTGACCAAATTATAAAGGTAGATAGAAAAAGGAAGGAACAAAGTGAGGAACAGGAAGAAGATGATGATGAGAATAGAGCAGAGGATGAGGAGCCCTCAAGTCAGAAGAAGCCTCGTTTAGTTTGGGATGCTGAGTTGCATAGAAAATTTGTTGACGCAGTTAATCGACTAGGCCTTGATAATGCTGTTCCTAAGAAAATACTTGACTTGATGAATGTCGAAGGGCTTACAAGGGAAAATGTGGCAAGCCATCTGCAGAAATTCAGGCTCGGTCTAAGAAAGGCAACTCAGCAGGGTAATCAGGTTGCAACTGCATTTGGTGGTATTAGTGATCCCTACCTGCAGATGGGTTCAGTAGATGGATATCGAGATTTTTGCACTCCATATGGGTCAAGAAGAATCTCAAGCACCACACTACCATCATATGCATCTGGTGGAATTTATTGTGGGCTAAACTCCCCACCCGGTTCAAGCTTAGGAGGAATTGGTTCTTCCCTGGCCCAGTGGCGGCAAGCTCAGTCTCAAAACACGACCAACCCCATAAACTTAGTTCGAAACTACCAGCTCTCCATGTTTTCTGCAAATCAAAGCTCGAGTTTATTACCAGGCACTTCAACATCTGCTGAGCTTAACCGTTTTCAGCAAAGCAACTGTACAACAGGTATTAGGCAGGTAAGTCCATTTGATAATTCAAATGGATTTACACTTTCCTCTGCCTTCCCAGATCATAAACCTGTTATTGGTAAAACAAATAACCCTCTATTTGGCCTCTCAAGTAATCATTTACTGTTTCAAGGAAATCTGGTGCCACCAACCCATAATCCAGGAGCATTTAGGAACCACTCTTCTCTTGGATCATCTCCTGTTAACACTGAAACATTTGACACTGGCATCTCTGGCTCCTCTAATGTGTCAGAGTATAATGAAAGGTGGCAAAGTACTGCTCAGTTATCCAACTTTCCTGCCAATTCTTTGCCCTTGAGTGAGGCTTTCGATAACAATCAACTGCCTCACAATAGCGTAAAGTTTTCCTCCTCCACTTCTCATATTGGGAATAGTCCAGCTGATTTTTCTTCCATAAGTGACAATGCTGTTCCTCTTGAAGATGCTATAGATGATCTTAACTACCAAGGTGGCCTACTTGGGAATATCATACAGCAGCAAAGATGGGAAGATCATAAGCAGGATTTCAGTGAAAACATGAGTAATACCTTCAATTCTGCAACTTCACTCAGTTTTCCTAATGGACACAATAGTTACTTGGGGCACAACAGTTCAAACCAAAATAACACAGTTTGCAGCACAGTTGATGCATCTTTGGTTGGCCAAATGAATGATGCAAGAATGAAGTTAAATGACACATGCATTTTACAACAGATGACGTCCCAAGAAGGACTCGATCAGAATAATTTTGCGTACTTGGATGATATAATTTGTGAAATGAACAAGCAGGAGCAAAACGGAACCCTGTTGGATCATGTATCTGAGTCCTTATGA 2022 0.4209 MAENQKGSSDFMDEDGGDRFPVGMRVLAVDDDRTCLKVLENMLRSCQYHVTTTTNSIKALEMLRMNRNKFDLVISDVKMPDMDGFKLLELVGLEMDLPVIMLSGHKDKELVMKGVIHGACDYLLKPVRIEELQNIWQHVVRKKIDRKDHSKASASIEETSNMAGEGSHGIASENNSDQIIKVDRKRKEQSEEQEEDDDENRAEDEEPSSQKKPRLVWDAELHRKFVDAVNRLGLDNAVPKKILDLMNVEGLTRENVASHLQKFRLGLRKATQQGNQVATAFGGISDPYLQMGSVDGYRDFCTPYGSRRISSTTLPSYASGGIYCGLNSPPGSSLGGIGSSLAQWRQAQSQNTTNPINLVRNYQLSMFSANQSSSLLPGTSTSAELNRFQQSNCTTGIRQVSPFDNSNGFTLSSAFPDHKPVIGKTNNPLFGLSSNHLLFQGNLVPPTHNPGAFRNHSSLGSSPVNTETFDTGISGSSNVSEYNERWQSTAQLSNFPANSLPLSEAFDNNQLPHNSVKFSSSTSHIGNSPADFSSISDNAVPLEDAIDDLNYQGGLLGNIIQQQRWEDHKQDFSENMSNTFNSATSLSFPNGHNSYLGHNSSNQNNTVCSTVDASLVGQMNDARMKLNDTCILQQMTSQEGLDQNNFAYLDDIICEMNKQEQNGTLLDHVSESL 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1328 673 MobiDBLite consensus disorder prediction 147 214 - -
Lal19g1328 673 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Lal19g1328 673 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Lal19g1328 673 SUPERFAMILY CheY-like 23 148 IPR011006 -
Lal19g1328 673 Gene3D - 208 270 - -
Lal19g1328 673 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 661 IPR045279 GO:0009736
Lal19g1328 673 SMART REC_2 24 136 IPR001789 GO:0000160
Lal19g1328 673 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 268 IPR017930 -
Lal19g1328 673 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Lal19g1328 673 CDD REC_typeB_ARR-like 26 140 - -
Lal19g1328 673 Pfam Myb-like DNA-binding domain 216 262 IPR001005 -
Lal19g1328 673 SUPERFAMILY Homeodomain-like 210 269 IPR009057 -
Lal19g1328 673 MobiDBLite consensus disorder prediction 155 177 - -
Lal19g1328 673 PIRSF RR_ARR_type-B 1 672 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lal19g1328 673 Gene3D - 23 159 - -
Lal19g1328 673 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1328 Lal-Chr19 16217943 16222371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1328 14 666 Response Regulator Gene Family AT5G58080 37.463 2.62e-108 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lal19g1328 Response_reg 1.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1328 K14491 - gmx:100807822 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1328 19 16217943 16222371 Lal19g1328 19 16217943 16222371 ECH