Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1284 ATGCCTCCTCCCCCTTCTTCAATTCATGGCGATCCTCATTCAAAATCAAACTCCAACCTTCTCTCCCTTTTCCTCAAACCAATCATCATGCTTCTCCTCACCTCTCTCTTCTTCCTCTTCATCGGTTTCGCCGCCTTCCTCCTCCTCCATGTCTTCCTCCTCGGCGGCGCTCTCCACCGCCTCCGCTTCCGCCATAACCCCACCCGCAACCTCAACACCCTCCCACGCTTCCGCGTCTCCGGGGGATCCGAACCCGCTCCCGAATCCCGTTGCGTTGTCTGCCTCGACGGCTTTCGCAACGGCCAGTGGTGCCGGAAGCTCGCCGATTGCGGCCACGTCTTTCACCGCCGATGCGTTGACACGTGGCTGGTTAAGGTCGCTGCTTGCCCTACTTGCCGTACACCTGTTCGAATCAATGCTGAGGCGAATGTAGCAGCTCAGGATGATAGGCTATTTTGGAATTGCGCCAATAACACTAACGCTATCACTATTATCAAACATAAATTGGATGTTAATTGGATAAGACATGTGATGGAGTCGTGA 543 0.5414 MPPPPSSIHGDPHSKSNSNLLSLFLKPIIMLLLTSLFFLFIGFAAFLLLHVFLLGGALHRLRFRHNPTRNLNTLPRFRVSGGSEPAPESRCVVCLDGFRNGQWCRKLADCGHVFHRRCVDTWLVKVAACPTCRTPVRINAEANVAAQDDRLFWNCANNTNAITIIKHKLDVNWIRHVMES 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1284 180 Pfam Ring finger domain 90 133 IPR001841 -
Lal19g1284 180 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 7 156 - -
Lal19g1284 180 SUPERFAMILY RING/U-box 87 139 - -
Lal19g1284 180 PANTHER RING-H2 FINGER PROTEIN ATL56 7 156 - -
Lal19g1284 180 SMART ring_2 91 132 IPR001841 -
Lal19g1284 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 142 IPR013083 -
Lal19g1284 180 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1284 Lal-Chr19 15960715 15963054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1284 15 155 C3H Transcription Factor Family AT2G18670 42.857 4.28e-27 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1284 - - gmx:102664895 191.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1284 19 15960715 15963054 Lal19g1284 19 15960715 15963054 ECH
Lal14g1742 14 17416094 17421817 Lal19g1284 19 15960715 15963054 LSH