Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1276 ATGGGTAGAGTTCCATGCTGTGACAAGGCCAATGTTAAGAAAGGACCTTGGTCTCCTCAAGAAGATGCTGCACTCAAAAACTACATTGAAAATAATGGAACTGGAGCAAATTGGATTGCTCTTCCTCAAAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGGCTTAGGTGGTTGAATTACTTGAGGCCTAATATCAAGCATGGCGGATTTACTGAAGAAGAAGACAACATCATCTGCAGCCTTTATATTAGCATAGGCAGCAGGTGGTCCATTATTGCAGCACAATTACCTGGAAGGACAGACAATGATATCAAGAACTATTGGAATACAAGGTTGAAGAAGAAAATGTTTGGGAGGCGCAAACAATCTAACTTCAACACAAAAGAAACAAAAGGGATTGAAGAGAATTCATCAAATTCCCTTAGTAGTTCTGCTCTTGAAAGACTTCAATTGCATATGCAACTTCAAAGCCTTCAAAACCCTTTCTCTTTCTACACTAATCCTTCATTGTGGCCTAAGTTGCTTCCTTCCCAAGAAAAGATGATTCAGCAATCTTTGAGTGATGCCTCTAACTCTAACACTGTTGTGGTGCAAGGACAAAAAGATGAGTTCTACAAACCAACTATAGTTTGTGGTTTACTTCAACAAGATATTGGTGCAAATATCCATACCCCGAAGGTTGAGAATCCTTTGAATAACAGTTCAATTCCCTTCATTTCTAATTCTGGGAATAATATTCCAAAGCACTCATCAAGTATTGTTGAGCGAACTACTAATATGGAACTTCAGGAAGTTTGTGCACTACAAATTACTGAACTTGATGACATTCTCAACAATAGAACCGTGGGTAATTATTTACAACAAGAAGAAGAACAGAATATGGCTGAATTTGATTGTTTCAGAGATATGGATGATTCAAAGGACAATATCAGCTTGATTTGGTGGTCCAATGATTCTGATGCCAAGTCAACTACTCCAGTTCTTATGTCAGAAGGGATGTTCCAAGATTATGAACTAGGTTACAGTTTGTAA 1035 0.3816 MGRVPCCDKANVKKGPWSPQEDAALKNYIENNGTGANWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKMFGRRKQSNFNTKETKGIEENSSNSLSSSALERLQLHMQLQSLQNPFSFYTNPSLWPKLLPSQEKMIQQSLSDASNSNTVVVQGQKDEFYKPTIVCGLLQQDIGANIHTPKVENPLNNSSIPFISNSGNNIPKHSSSIVERTTNMELQEVCALQITELDDILNNRTVGNYLQQEEEQNMAEFDCFRDMDDSKDNISLIWWSNDSDAKSTTPVLMSEGMFQDYELGYSL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1276 344 CDD SANT 71 113 IPR001005 -
Lal19g1276 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lal19g1276 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lal19g1276 344 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lal19g1276 344 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lal19g1276 344 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lal19g1276 344 CDD SANT 16 62 IPR001005 -
Lal19g1276 344 PANTHER OS09G0431300 PROTEIN 1 305 - -
Lal19g1276 344 Gene3D - 7 68 - -
Lal19g1276 344 PANTHER OS09G0431300 PROTEIN 1 305 - -
Lal19g1276 344 Gene3D - 70 142 - -
Lal19g1276 344 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lal19g1276 344 SMART sant 67 115 IPR001005 -
Lal19g1276 344 SMART sant 13 64 IPR001005 -
Lal19g1276 344 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1276 Lal-Chr19 15894435 15896309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1276 1 177 MYB Transcription Factor Family AT5G57620 75.806 3.91e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal19g1276 Myb_DNA-binding 2.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1276 K09422 - gmx:778083 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1276 19 15894435 15896309 Lal19g1276 19 15894435 15896309 ECH
Lal14g1730 14 17329911 17331612 Lal19g1276 19 15894435 15896309 LSH
Lal7g1133 7 17224118 17226053 Lal19g1276 19 15894435 15896309 LSH