Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1275 ATGTGTAATAGTAAAGGGTTTCAATGTTTAAGCGAATCAGATAATTATATATTTGATCATCATTTTCACCAACAACACTATTTCATGGATAGCCCCACCGCAGTTGGATCACCAGCCACCTGTGGTTCTGGTCCCGGATTCAACGACTATATGCGGCGTGTTAAATTCTTATGTAGCTTTCTAGGTAGCATAATGCCACGTCCCCAAGATGGGAAATTACGTTATGTAGGTGGAGAGACTCGTATTGTGAGTGTTCCACGTGATATTAGCTATGAGGAATTGATGGTGAAGATGAGAGAGTTGTATGATGATGCTGCTGTGTTGAAGTACCAGCAACCTGATGAGGATCTTGATGCCCTTGTCTCCGTTGTCAATGACGATGATGTGGTTAACATGATGGAAGAATATGATAAGTTGGGTTCAGGTGATGGATTCATTAGGCTCAGGATTTTCTTGTTTTCGCAATCCGAGCAGGATGGTTCCTCACATTTCATTGATGGGGATGATAATGAGAGGAGGTATGTTGATGCATTGAATAGTTTAAACGACGTTTCTGATTTTAGGAAGTTGAATCAAATGGACTTTACTGTCATTAGTCCTGTTGAGGATATCCATGTACCTGATCAGTTTTACAATCCAGTTAGTGTAGAGAGTGGGATTCATAGCCAGAGAAGTGGGGAACTATCTATGCCACAACAGTATAATTTGCATCATCTTACCATGCAGCAACCTATGAGTCAGAGGTTTAGTGAAATGGATTCTCCATGGAGTCCTGCTTTTTACTCTCCTAGGCATCATGCTCACCATGACTCAAGATCGTTGGTAGAGTTTCCGCCTTCTCCTTCGAGCGCAAGGTACCGAGGGCCGTTTCCCGAGTTACCGGATTATGGAGTGCCCGAAGAGTATGCTCGCCATCATGTGTATGACAATCAACCACAATATCCTGAAAATGTTGTGTGGGTGCAAACTGCAGCACCACCACATGGTGAAAAATCCGGGTTTCCAGGAAACATTCTTCATGGATCCAATGTTGTTGATGGGAACAGTATATGTGACCATTGTCGCATGAGTTTTCCGAGAGGTCAACCACCTCTGGACCTTCCTAATAATATCAGTAATGGACTACCACCAGTTGTTGCTAATCCATGTGCTGAATGCCCCTCACCTACGGTGAATGCTATATATCCGAATGAGCCTAGTAATGATATTGCTATAAACTTGTCCAGACATGGTAGTATGAACGGACATCCTTACTTGTCTAGGCACGGTAGTCTGAATGATGGACATACTTTGTCTGCCAATTACATTCAGCAACGACATGGACCTGAAATGGGAAATGAACTATTTCCTGACCAAACCATGCCTGCTATACCACATATTCAAATTCCTTCCCTCGAAGAGCACAGTGTCCATTTTGGAAATCCTCCTTCTCCTTATGCAGTGGATAGTCATTATGCTGTGCCCCATGGACATGTACCCGGGCATGCTTTCTGGAGAAACACTCCAGCTCCGGTTCATATTGGACCATCTTATGAGGTATCTACTTCATCTCAGCAGGTGAATGGTATGATGAATGCTGGATTAATCAGGGCCGAGAGCAATTCAGGATTTTTAGTTCGGCCAGATAGTCAAAACCACATTCCTTTGGTAGATTCCCCACAGATATTGTCAGGACATGATGGGTCAGCTATCTCGGAACATCCTTATGTACACGCTCTGAAATTGAGTTCAAATGCCATTGGTGAGGAAAATCAACATCCATTTACTGTAGATGTCACCCACCCCCCACAGTACATAAGTGCTAGCACTTTCTTGGAACCTGTGCAGCTGCCAAAATCACCCATTCACATGGTTCACGTCAATGTCAAAAACTCTAATGTGCAACCGCAGAGTATATCCTTTTCAGAGCAAAATAAAGTTGTGGAGAATGTATTCAGAACTGCCGGTCCTGTTGAGTCTTATAATTTAAATTCTAAACCTATAACAGAGTGTGGAAATCTTGAGAAACTGACAGATAAAGACCCTTCTGCTCCAGAAGATTCTAAGATTTTGGTTGATCAATTCAGTTTCTTGCCTGAGTTGATTGCTTCTGTAAAAAAGGCTGCATTAGAAGGTTCTCAGGAGGTGAGACCGAAAGCTGATGAGTGTGCCAATTCTCAGATGCACATTTCAACTCCCAAAGAAGAAACAACAAATGAAGTAGAACTAGTGAATGCTCATGATGATTTAGAATTGGAACCCGAAAATGACCATGTGGATACTTCTACAATTGAGCCTACAAAGGCTGAGGAAGAAGCAATTGCTAAGGGATTGCAGACAATTAAAAATGATGATTTGGAGGAGATACGTGAGCTAGGTTCTGGAACTTATGGGTCTGTTTATCATGGGAAATGGAAGGGTTCTGATGTTGCCATTAAGAGAATAAAAGCTAGTTGTTTTGCTGGAAGACCATCTGAAAGAGCAAGATTGATTGCAGATTTTTGGAAAGAGGCATTGATGCTGAGTTCATTACATCATCCAAATGTTGTCTCCTTCTATGGTATTGTCCGTGATGGCCCCGATGGTTCTTTAGCAACTGTGACAGAATTCATGATTAATGGGTCTTTAAAACAGTTCTTGCATAAAAAAGATAGGACGATAGATCGTCGTAAGAGGCTCATAATAGCTATGGATGCTGCATTTGGGATGGAGTATTTGCATGCAAAGAACATTGTGCATTTTGATTTGAAATGCGAGAATCTATTGGTCAACATGAGAGATCCGCAACGGCCTGTCTGCAAGATTGGTGATTTGGGTTTATCAAAGGTCAAACAGCACACAATGGTTTCAGGAGGGGTGCGGGGAACTTTGCCATGGATGGCACCTGAACTTCTTAGCGGGAAAAGCACTATGGTGTCAGAGAAGATTGATGTTTACTCATTTGGGATAGTCATGTGGGAAGTACTCACTGGGGATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAGGAGGAATTGTGAACAATAGCTTACGTCCTCAAACCCCAACATGGTGTGATCCTGAATGGAAGTCTCTAATGGAAAGTTGTTGGGCTTCTGATCCTACAGAAAGACCATCATTTTCAGAAATTTCAAAGAAGCTAAGGAGTATGGCTGCTGCAATGAATGTGAAATAA 3159 0.4223 MCNSKGFQCLSESDNYIFDHHFHQQHYFMDSPTAVGSPATCGSGPGFNDYMRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVPRDISYEELMVKMRELYDDAAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFIRLRIFLFSQSEQDGSSHFIDGDDNERRYVDALNSLNDVSDFRKLNQMDFTVISPVEDIHVPDQFYNPVSVESGIHSQRSGELSMPQQYNLHHLTMQQPMSQRFSEMDSPWSPAFYSPRHHAHHDSRSLVEFPPSPSSARYRGPFPELPDYGVPEEYARHHVYDNQPQYPENVVWVQTAAPPHGEKSGFPGNILHGSNVVDGNSICDHCRMSFPRGQPPLDLPNNISNGLPPVVANPCAECPSPTVNAIYPNEPSNDIAINLSRHGSMNGHPYLSRHGSLNDGHTLSANYIQQRHGPEMGNELFPDQTMPAIPHIQIPSLEEHSVHFGNPPSPYAVDSHYAVPHGHVPGHAFWRNTPAPVHIGPSYEVSTSSQQVNGMMNAGLIRAESNSGFLVRPDSQNHIPLVDSPQILSGHDGSAISEHPYVHALKLSSNAIGEENQHPFTVDVTHPPQYISASTFLEPVQLPKSPIHMVHVNVKNSNVQPQSISFSEQNKVVENVFRTAGPVESYNLNSKPITECGNLEKLTDKDPSAPEDSKILVDQFSFLPELIASVKKAALEGSQEVRPKADECANSQMHISTPKEETTNEVELVNAHDDLELEPENDHVDTSTIEPTKAEEEAIAKGLQTIKNDDLEEIRELGSGTYGSVYHGKWKGSDVAIKRIKASCFAGRPSERARLIADFWKEALMLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMINGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHAKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTMVSGGVRGTLPWMAPELLSGKSTMVSEKIDVYSFGIVMWEVLTGDEPYADMHCASIIGGIVNNSLRPQTPTWCDPEWKSLMESCWASDPTERPSFSEISKKLRSMAAAMNVK 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1275 1052 SMART PB1_new 68 153 IPR000270 GO:0005515
Lal19g1275 1052 ProSiteProfiles Protein kinase domain profile. 779 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal19g1275 1052 SMART serkin_6 779 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal19g1275 1052 SUPERFAMILY CAD & PB1 domains 70 160 - -
Lal19g1275 1052 CDD STKc_MAP3K-like 785 1042 - -
Lal19g1275 1052 ProSitePatterns Protein kinases ATP-binding region signature. 785 806 IPR017441 GO:0005524
Lal19g1275 1052 Gene3D Phosphorylase Kinase; domain 1 765 864 - -
Lal19g1275 1052 PRINTS Tyrosine kinase catalytic domain signature 861 874 IPR001245 GO:0004672|GO:0006468
Lal19g1275 1052 PRINTS Tyrosine kinase catalytic domain signature 898 916 IPR001245 GO:0004672|GO:0006468
Lal19g1275 1052 PRINTS Tyrosine kinase catalytic domain signature 969 991 IPR001245 GO:0004672|GO:0006468
Lal19g1275 1052 PRINTS Tyrosine kinase catalytic domain signature 1013 1035 IPR001245 GO:0004672|GO:0006468
Lal19g1275 1052 SUPERFAMILY Protein kinase-like (PK-like) 771 1040 IPR011009 -
Lal19g1275 1052 Pfam Protein tyrosine and serine/threonine kinase 780 1042 IPR001245 GO:0004672|GO:0006468
Lal19g1275 1052 ProSitePatterns Serine/Threonine protein kinases active-site signature. 904 916 IPR008271 GO:0004672|GO:0006468
Lal19g1275 1052 PANTHER - 374 619 - -
Lal19g1275 1052 PANTHER - 621 1052 - -
Lal19g1275 1052 PANTHER - 30 272 - -
Lal19g1275 1052 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 374 619 - -
Lal19g1275 1052 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 30 272 - -
Lal19g1275 1052 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 621 1052 - -
Lal19g1275 1052 CDD PB1_UP2 57 153 - -
Lal19g1275 1052 Gene3D - 72 156 - -
Lal19g1275 1052 Pfam PB1 domain 69 153 IPR000270 GO:0005515
Lal19g1275 1052 Gene3D Transferase(Phosphotransferase) domain 1 865 1052 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1275 Lal-Chr19 15885030 15890702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1275 48 1052 MAP Kinase Kinase Kinase AT5G57610 55.137 0.0 1022
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Lal19g1275 PK_Tyr_Ser-Thr 1e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1275 - - lang:109355391 2016.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1275 19 15885030 15890702 Lal19g1275 19 15885030 15890702 ECH
Lal14g1729 14 17318346 17324936 Lal19g1275 19 15885030 15890702 LSH
Lal7g1132 7 17214503 17220770 Lal19g1275 19 15885030 15890702 LSH
Lal19g1275 19 15885030 15890702 Lal21g1133 21 13875267 13883255 PCT
Lal19g1275 19 15885030 15890702 Lal4g1385 4 18085641 18098974 PCT
Lal21g1133 21 13875267 13883255 Lal19g1275 19 15885030 15890702 PCT
Lal4g1385 4 18085641 18098974 Lal19g1275 19 15885030 15890702 PCT