Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1256 ATGGACTCATCAACTTCTTCTTCACCCCACAACACCAACTTCAACAACAACTCCCTCGCTTTTTCCCTATCTAACCACTTTTCTAACCCTTCCTCTTCACAACAACACTCTTCCCCCCACCTTTCCCTCTTCCACTCCTTCACTTACCCAACACCCTCATCATCTCTTTACCTCTCAGGGAGCAATAACGTGGATGCACCGCCAGAGACAACTAATCTCTCTATATTCAGCGGTGGACCAAAGTTCGAGAACTTCTTAGGCTGTTCCACTACAACAACAGCCACAGGTGCACCCTTACAACTTCACCAGTTCTCTACCGAAACCGACATATATGATTCGGAACTGAAGACAACCATAGCTGCTTGTTACCCTCGCAGCTTCGGTGCCGAACCACCCACCGAACCTCAAAAACCAACTCCAAAGAAAACTTCTGACACCTTTGGCCAACGCACCTCCATCTACCGTGGCGTCACCCGACATAGATGGACGGGGAGATATGAAGCTCATCTTTGGGATAATAGCTGCAGAAGGGAAGGACAAAGCAGAAAAGGAAGACAAGGTGGTTACGACAAGGAAGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGTCCAACAATCACCACAAACTTCCCTATCTCTAACTATGAGAAGGAACTGGAGGAAATGAAGAACATGACCAGACAAGAGTTTGTTGCTTCTCTAAGAAGGAAGAGCAGTGGTTTCTCTAGAGGGGCCTCTATATACAGAGGAGTGACAAGGCACCACCAGCATGGCCGGTGGCAGGCAAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGTACACAAGAAGAAGCTGCAGAGGCTTATGACATTGCAGCTATAAAATTCAGAGGACTAAATGCAGTGACCAACTTTGACATGAGTCGCTATGATGTGAAGAACATTGCAAATAGTACCCTTCCTATTGGTGGTTTATCAAGCAAGAACAAAAACTCCACAGACTCTGTATCTGATCAGAGCAAAAGCCATTCAGATGAGAGAGATCCATCTAATTCAGCTTCATCAGTGTCCTTTGCATCAAACCAGCAACGACCACCTTCAAATTCTACTCTCAGCTTTGCCATTCCCATCAAACAAGACCCTTCAGATTATTGGTCCATCCTAGGCTACCATAATAATAACACTACTAGTGTTACTACTACACCAACTTCTTTTCCTTCTTCCACCAATGGCACACCATTCCTCATGGATTTCTCTGCTCCCCCTTCAAGTGATAATACTAACAATGCTGCTGCATTTTTTAATGGTGGAAACATCTTTGTTCAGCCACAAAGTGGTGATTGTTCTAATAATTCAAGTTCAATCCCATTGGCCACACCTATCTTTTCTTTAAATAGTAATAGTGGTTATGATAATTCTTCTGGTGGTTATGGAAACTGGATTGGACCAACCCTGCACACATTCCAAACCCATGCAAAACCAAGTCTTTTTCAAACCCCAATATTTGGCATGGAATGA 1530 0.4451 MDSSTSSSPHNTNFNNNSLAFSLSNHFSNPSSSQQHSSPHLSLFHSFTYPTPSSSLYLSGSNNVDAPPETTNLSIFSGGPKFENFLGCSTTTTATGAPLQLHQFSTETDIYDSELKTTIAACYPRSFGAEPPTEPQKPTPKKTSDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTITTNFPISNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKNIANSTLPIGGLSSKNKNSTDSVSDQSKSHSDERDPSNSASSVSFASNQQRPPSNSTLSFAIPIKQDPSDYWSILGYHNNNTTSVTTTPTSFPSSTNGTPFLMDFSAPPSSDNTNNAAAFFNGGNIFVQPQSGDCSNNSSSIPLATPIFSLNSNSGYDNSSGGYGNWIGPTLHTFQTHAKPSLFQTPIFGME 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1256 509 Pfam AP2 domain 153 208 IPR001471 GO:0003700|GO:0006355
Lal19g1256 509 Pfam AP2 domain 252 302 IPR001471 GO:0003700|GO:0006355
Lal19g1256 509 SMART rav1_2 252 316 IPR001471 GO:0003700|GO:0006355
Lal19g1256 509 SMART rav1_2 153 222 IPR001471 GO:0003700|GO:0006355
Lal19g1256 509 MobiDBLite consensus disorder prediction 325 377 - -
Lal19g1256 509 SUPERFAMILY DNA-binding domain 251 312 IPR016177 GO:0003677
Lal19g1256 509 PRINTS Ethylene responsive element binding protein signature 154 165 IPR001471 GO:0003700|GO:0006355
Lal19g1256 509 PRINTS Ethylene responsive element binding protein signature 292 312 IPR001471 GO:0003700|GO:0006355
Lal19g1256 509 SUPERFAMILY DNA-binding domain 152 218 IPR016177 GO:0003677
Lal19g1256 509 MobiDBLite consensus disorder prediction 325 342 - -
Lal19g1256 509 Gene3D AP2/ERF domain 252 312 IPR036955 GO:0003700|GO:0006355
Lal19g1256 509 Gene3D AP2/ERF domain 153 218 IPR036955 GO:0003700|GO:0006355
Lal19g1256 509 MobiDBLite consensus disorder prediction 125 148 - -
Lal19g1256 509 ProSiteProfiles AP2/ERF domain profile. 153 216 IPR001471 GO:0003700|GO:0006355
Lal19g1256 509 CDD AP2 152 218 IPR001471 GO:0003700|GO:0006355
Lal19g1256 509 MobiDBLite consensus disorder prediction 353 377 - -
Lal19g1256 509 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 136 358 - -
Lal19g1256 509 ProSiteProfiles AP2/ERF domain profile. 252 310 IPR001471 GO:0003700|GO:0006355
Lal19g1256 509 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 136 358 - -
Lal19g1256 509 CDD AP2 251 312 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1256 Lal-Chr19 15759424 15763264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1256 109 509 AP2-EREBP Transcription Factor Family AT5G57390 56.132 3.79e-141 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal19g1256 AP2 9.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1256 K09285 - gmx:100797828 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1256 19 15759424 15763264 Lal19g1256 19 15759424 15763264 ECH
Lal7g1116 7 17116176 17120021 Lal19g1256 19 15759424 15763264 LSH