Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1250 ATGATTTTGGTGACAGTTAATGCTCTGAATAAAGCTAGATTGGAAGCAAATATCAGAGTGTATGGGGAAGAAAGCCACCAAAAGAAATGGCCAAACCCTTATGTTATTGTTTGTGGTTTTCTACTTTTGCTTTCATTTCTAAAATATGTATACCATCCCTTGCAATATCTGGCCCTTGGAGCAGTTGCTGTAGGTGTCATTCCAATCATCTTAAAAGCTCTTGTCTCAATTCGGAACCTTAGAATTGACATTAACATTCTCATGATCATAGCAGTTATTGGGACAATTGCTATGAAAGATTATTTGGAAGCAGGGACAATTGTTTTCCTCTTCTCAATTGCAGAATGGCTCGAGACAAGGGCAAGTCACAAGGCAAATGCAGTAATGTCATCATTGATGAGCATTGCGCCTAAAAAAGGAGTGATAGCTGAAACAGGAGAAGTGGTGGATGCTAATGATGTCAAAGTGAACACCATTATTGCTGTTAAGGCAGGGGAAGTGATACCCATTGATGGGATTGTTGTAGATGGAAACTGTGAAGTTGATGAGAAAACATTGACAGGAGAGTCATTTCCAGTACCTAAACAAAAGGATTCTATTGTATGGGCTGGCACCATTAATTTAAATGGTTATATTAGTGTGAAAACTACTGCAATAGCTGAGGATTGTGTGGTGGCTAAAATGGCAAAGCTTGTGGAAGAAGCTCAAAACAGCAAAACCAGCACTCAAAGATTGATTGACAAGTTTGCCAAGTTTTACACCCCAGCTGTTGTAGTCATAGCAACTCTTGTAGCAGTGATTCCATTTGCGTTTAGAGTCCATAATGAGAGACACTGGCTTCACTTTGCATTAGTTGTTTTAGTAAGTGCATGTCCATGTGCACTTATCCTTTCGACACCAGTTGCAACCTTTTGTGCTTATACAAAAGCAGCTACAACCGGTCTTCTCATCAAAGGGGGTGATCATCTTGAAACACTAGCAAAAGTTAAGGTCATGGCTTTTGACAAAACTGGTACCATAACAAAGGGTGAATTTGAGGTCACAAAATTTCAGTCTCTTTCAGATGACATTGATTTGAACACATTGATTTACTGGGTGTCAAGCATTGAAAGCAAATCAAGTCATCCCTTGGCAGAAGCAATTGTTGGTTATGGAAAGTCTCTGTCCATTGAACCAAAGCCTGAAAAGGTGACTGGATTTGAAAATTTTCATGGAGAAGGAATATGTGGATCAATCGATGATAGAGTTCTGTACATCGGAAATAAAAAAATTGCCACTAGAGCTGGGTCTGAAACAGTTCCAACCTTACAAGGTGAAAATCTAAGAGGAAAGACCACTGGCTACATATACTCTGAAGCAACCGCAATCGGAATTTTCTGTCTCTCAGATACTTGCCGGACCGGTGTTCAGGAGGCAATAGGGAAGCTCAAGTCATTGGGAATCAAAACAATTATGCTTACAGGAGATAGTGAAGCAGCTGCATTGCAAGCACAGGAGCAGCTAGGGCAGGCTCTGGAATTAGTCCATGCAGAACTTTTGCCAGAGGACAAAGTAAAAATAATCTCAGAATTTAAAAAGGAAGGTCCAACAGCCATGGTTGGAGATGGTGTAAATGACGCGCCTGCATTAGCTACAGCTGACATAGGAATCTCAATGGGAGTTTCAGGTTCTGCACTGGCAAGTGAGACTGGCAATATAATTCTGATGTCAAATGACATTAGGAAGATACCAGAAGCCATTAAGCTTGCAAGAAAATCACATAGGAAAGTTATAGAAAATATTGTTTTATCAATCACTACTAAGGTTGCAATTATTGGTTTGGCCATTGGTGGTTATCCAATTGTTTGGGCTGCAGTTCTTGCTGATGTTGGAACATGTTTGTTGGTGATCTTAAATAGCATGTTGCTTCTGCGAAAAGGAAAAGGAAAAGGACACGATCATGGAGGAAAGTGTTGTAAGTCTTCCACCCAGTTACACATCCATAAAAATGGATGTGCTCACGATCATCAACATGGTCATGATCACGATCATCAACACGGTCATGACCACGATCATCAACACGGTCATGACCACGATCATCAAGACGGTCATGACCACGATCATCAAGACGGTCATGACCACGGTCATGATCATCAACGCGGTCATGATCACGATCATCAACGCGGTCATGATCACGATCATCAACACGATCACGATCACGATTATCAACACGATCACGATCATGATCATCAGCGTGGTCACGATCACGACCATCAGCGTGGTCATGATCACAACCATCAACACTGTCATGATCACGATCACCAACATGATCATGATCACGATCATGATCATCAGCATTGTGTTGATCACGATCATCAACATGGATACAAAGGGCATGGTTTTGAAGTAGGCGTACCAAAAATTATTGTTGAACAGGTGTAG 2421 0.411 MILVTVNALNKARLEANIRVYGEESHQKKWPNPYVIVCGFLLLLSFLKYVYHPLQYLALGAVAVGVIPIILKALVSIRNLRIDINILMIIAVIGTIAMKDYLEAGTIVFLFSIAEWLETRASHKANAVMSSLMSIAPKKGVIAETGEVVDANDVKVNTIIAVKAGEVIPIDGIVVDGNCEVDEKTLTGESFPVPKQKDSIVWAGTINLNGYISVKTTAIAEDCVVAKMAKLVEEAQNSKTSTQRLIDKFAKFYTPAVVVIATLVAVIPFAFRVHNERHWLHFALVVLVSACPCALILSTPVATFCAYTKAATTGLLIKGGDHLETLAKVKVMAFDKTGTITKGEFEVTKFQSLSDDIDLNTLIYWVSSIESKSSHPLAEAIVGYGKSLSIEPKPEKVTGFENFHGEGICGSIDDRVLYIGNKKIATRAGSETVPTLQGENLRGKTTGYIYSEATAIGIFCLSDTCRTGVQEAIGKLKSLGIKTIMLTGDSEAAALQAQEQLGQALELVHAELLPEDKVKIISEFKKEGPTAMVGDGVNDAPALATADIGISMGVSGSALASETGNIILMSNDIRKIPEAIKLARKSHRKVIENIVLSITTKVAIIGLAIGGYPIVWAAVLADVGTCLLVILNSMLLLRKGKGKGHDHGGKCCKSSTQLHIHKNGCAHDHQHGHDHDHQHGHDHDHQHGHDHDHQDGHDHDHQDGHDHGHDHQRGHDHDHQRGHDHDHQHDHDHDYQHDHDHDHQRGHDHDHQRGHDHNHQHCHDHDHQHDHDHDHDHQHCVDHDHQHGYKGHGFEVGVPKIIVEQV 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1250 806 CDD P-type_ATPase_HM 35 635 - -
Lal19g1250 806 Pfam haloacid dehalogenase-like hydrolase 329 547 - -
Lal19g1250 806 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 107 614 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal19g1250 806 Pfam E1-E2 ATPase 145 311 - -
Lal19g1250 806 PRINTS Copper-transporting ATPase signature 124 142 - -
Lal19g1250 806 PRINTS Copper-transporting ATPase signature 255 269 - -
Lal19g1250 806 PRINTS Copper-transporting ATPase signature 511 528 - -
Lal19g1250 806 PRINTS Copper-transporting ATPase signature 568 582 - -
Lal19g1250 806 SUPERFAMILY Calcium ATPase, transduction domain A 147 232 IPR008250 -
Lal19g1250 806 MobiDBLite consensus disorder prediction 665 787 - -
Lal19g1250 806 ProSitePatterns E1-E2 ATPases phosphorylation site. 335 341 IPR018303 -
Lal19g1250 806 Gene3D - 344 465 IPR023299 GO:0000166
Lal19g1250 806 SFLD C1.7: P-type atpase like 316 585 - -
Lal19g1250 806 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Lal19g1250 806 PRINTS P-type cation-transporting ATPase superfamily signature 333 347 - -
Lal19g1250 806 PRINTS P-type cation-transporting ATPase superfamily signature 479 489 - -
Lal19g1250 806 PRINTS P-type cation-transporting ATPase superfamily signature 533 552 - -
Lal19g1250 806 PRINTS P-type cation-transporting ATPase superfamily signature 557 569 - -
Lal19g1250 806 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 7 658 - -
Lal19g1250 806 SUPERFAMILY Calcium ATPase, transmembrane domain M 84 617 IPR023298 -
Lal19g1250 806 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 84 638 - -
Lal19g1250 806 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 84 636 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lal19g1250 806 SFLD p-type atpase 316 585 IPR044492 -
Lal19g1250 806 Gene3D - 324 584 IPR023214 -
Lal19g1250 806 Gene3D - 122 236 - -
Lal19g1250 806 SUPERFAMILY HAD-like 332 634 IPR036412 -
Lal19g1250 806 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 7 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1250 Lal-Chr19 15708805 15716713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1250 6 770 Primary Pumps ATPases AT4G30110 58.209 0.0 927
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1250 K01534 - gmx:100817567 1075.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1250 19 15708805 15716713 Lal19g1250 19 15708805 15716713 ECH
Lal14g1695 14 17121602 17129134 Lal19g1250 19 15708805 15716713 LSH