Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1235 ATGAAGATGGCATTTTTTAGAAAGGCTATTGAAGATATGGCTGCAGATAGTCTGAGATGTGTTACCATTGCATATAGATTATATGATATGGAGAATGTTCTGACTAATGAAGAACTAGCTCACTGGTCATTACCAGAGGATGATCTCGTTTTACTGGCTATCGTTGGACTGAAGGATCCTTGTCGACCAGGTGTCAAAGATGCAGTGCAGCTTTGCCAAAAGGCTGGGGTTAAGGTTAAAATGGTCACCGGTGACAATGTTAAAACTGCAAAAGCAATTGCTTTGGAATGTGGTATACTTGCTTCATTTGCTGATGCTACAGAGCTAAACATCATTGAAGGGAAAGCATTCCGTGCCTTGTCAGATGAAGAGAGAGAAGAAATTGTTGAAAGGATATCGGTTATGGGACGGTCCTCTCCAAATGACAAGCTTTTACTTGTGGAAGCATTGAGGAGGAAGGGTCATGTTGTGGCCGTAACTGGGGATGGAACAAATGATGCTCCTGCACTACATGAGGCTGATATAGGTCTTGCAATGGGTATTCAAGGCACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCTGTTGTGAAGCATAACTGGGGTAGTGCCTTTCAATTTTCTCCACCAATGCAGGTTGTGAGATGGGGGCGCTCTGTATATGCAAATATTCAGAAATTTATCCAATTTCAGCTTACTGTCAATATAGCAGCTCTTGTTATAAATGTTATTGCTGCTTTTTCCTCTGGTGATGTCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCACTGGCCTTGGCAACCGAACCACCAACCGATCACCTGATGGATCGGCCTCCAGTGGGTCGAAGTGAACCTCTTGTAACAAATATTATGTGGAGGAATCTGCTGGTGCAGGCAATGTACCAAGTGACTGTCTTGCTTATACTCAACTTCCAAGGCAGGAGCTTACTGGGCATGAGGCACGATACCAACGATCATGTAATCAAAGTGAAGAACACATTGATATTCAATTCATTTGTTCTTTGTCAAGTCTTTAATGAATTTAATGCAAGAAAACCAGATGAGTTCAACATATTCAAGGGAGTCACAAGAAACTACCTCTTTATGGGGATAGTGGGACTCACTGTTGTGCTTCAGATCGTCATCATTGAATTTCTTGGAAAGTTCACTAAAACAGTCAAGCTTAATTGGCAGCAGTGGCTCATTTCCATCATTATAGGATTTATCAGTTGGCCTCTTGCTGTGGTTGGGAAACTGATACCAGTTCCAGAGACTCCCATTAAAAACTTATGTCCAAGATTTCATCGTAGAAGAACAAAGAAGGAAGAAATTTGA 1383 0.4136 MKMAFFRKAIEDMAADSLRCVTIAYRLYDMENVLTNEELAHWSLPEDDLVLLAIVGLKDPCRPGVKDAVQLCQKAGVKVKMVTGDNVKTAKAIALECGILASFADATELNIIEGKAFRALSDEEREEIVERISVMGRSSPNDKLLLVEALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKHNWGSAFQFSPPMQVVRWGRSVYANIQKFIQFQLTVNIAALVINVIAAFSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDRPPVGRSEPLVTNIMWRNLLVQAMYQVTVLLILNFQGRSLLGMRHDTNDHVIKVKNTLIFNSFVLCQVFNEFNARKPDEFNIFKGVTRNYLFMGIVGLTVVLQIVIIEFLGKFTKTVKLNWQQWLISIIIGFISWPLAVVGKLIPVPETPIKNLCPRFHRRRTKKEEI 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1235 460 Pfam Cation transporting ATPase, C-terminus 259 436 IPR006068 -
Lal19g1235 460 PANTHER CALCIUM-TRANSPORTING ATPASE 2 448 - -
Lal19g1235 460 Gene3D - 6 60 IPR023299 GO:0000166
Lal19g1235 460 PANTHER CATION TRANSPORTING ATPASE 2 448 - -
Lal19g1235 460 PRINTS H+-transporting ATPase (proton pump) signature 6 24 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal19g1235 460 PRINTS H+-transporting ATPase (proton pump) signature 160 176 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal19g1235 460 Gene3D - 211 427 - -
Lal19g1235 460 SUPERFAMILY Calcium ATPase, transmembrane domain M 9 438 IPR023298 -
Lal19g1235 460 Gene3D - 61 205 IPR023214 -
Lal19g1235 460 PRINTS P-type cation-transporting ATPase superfamily signature 53 64 - -
Lal19g1235 460 PRINTS P-type cation-transporting ATPase superfamily signature 75 85 - -
Lal19g1235 460 PRINTS P-type cation-transporting ATPase superfamily signature 160 179 - -
Lal19g1235 460 PRINTS P-type cation-transporting ATPase superfamily signature 184 196 - -
Lal19g1235 460 SUPERFAMILY HAD-like 5 279 IPR036412 -
Lal19g1235 460 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 126 254 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal19g1235 460 Pfam haloacid dehalogenase-like hydrolase 50 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1235 Lal-Chr19 15607627 15630920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1235 2 445 Primary Pumps ATPases AT5G57110 74.099 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1235 K01537 - gmx:100792945 738.028