Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1223 ATGGCTCCAAGAATCCTACTATGCGGCGACGTTTTAGGTCGCCTTAACCTCCTCTTGAAGCGCGTCTCATCGGTTAACAAATCAGCGGGTCCATTCGACGCGCTTTTATGCGTGGGTCAATTCTTCCCGGACTCACCTGATCAGCTTGACGAGTTCATGTCATATATTGAAGGTCGCTCTCAATCGCAGTTTCCTCTCCCTATTTACTTCATTGGTGATTATGGCATTGGTGCCCCTAATGTTTTGTTGAAGGCTTCAAAGGACTCTTCCAACCTTGGATTCAAGATGGATGGCTTCAGAATATGTCACAATTTGTATTGGTTGAAAGGCAGTGGCAAATTCTCTCTCTTCGGATTATCTGTGGTCTATTTATCTGGTATTAAATCACCAAATGCTCAACAGTTTGGAACTTACAGTCAAGATGATGTTGATGCTTTGCGTGCAATAGCTGAGGAGCCTGGAATTATTGATCTTGGGGTCACAAAAGAGGCAGCTACTTCAGACATTCCTTCTGGACTCTCAGATTCAGTAGGCAGTGATTCAACGATATCAGAGTTAGTACAAGAGATTAAACCACGATATCACATTGTTGGCACTAAGGGTATATACTATGCACGTGAACCATATTCCAATGTTGATGCTGTGCACGTGACTCGTTTTATAGGGCTTGCTTCTGTTGGAAATAGAGATAAGCAGAAATTTATTCATGCAATTTCTCCCACACCTGCATCCACCATGTCTTCTATGGAGATTGCCATGAAAACCACAAATACCACCTTATCGCCATACACATTTGTGGAGAAAAGCACTTCTCCAAAGGATGGCTCAAAGAGATCCAGCGATGGTATCTCTGATTCTCAACATTGGAGATATGATGTATCTCAGAAGCGGCAGAAACATGGAGCTGAAAATGGTAATAAGTTGTGTTTCAAATTTGTATCTTCCGGCTCTTGTCCGCGTGGAGAGGAGTGCTATTTTCGACACAACTCAGATGCAAGGGAACAGTCTATGAGAGGTGTTTGTTTTGAATTTTTGAACAAGGGAAAGTGTGTAAGGGGCCCCGATTGCAACTTTAAGCATAGCTTGCAGGAGGAAGATGATAGGCATTCTTCCAGGAGGCCTGGATCTGAAAATATTAGGTCTAGCAGATCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCACATTTAATCATAAGCATTGGGGAAAATTACTACTTGGCACTGGCTAAAGGTCCACTAATTGATGACCATGTGCTGATAATACCAGTTGAGCATATGCCAAGTACCTTATCTCTGGCATCTGAATCTGAAGTTGGTCTCTTTAGGTTCCAGAACAGTCTCATGAGGTATTGCAAGAACCAAGGAAAGGAAGTCATATTTTTCGAGTGGGTTTCCATTCGTGGCACTCATGCCAATCTGCAGGCCATTCCTATTCCATCTTCAAAAGCAGTGATGGCTGTTAAAGCATTTAATTTAGCTGCACAAAAGTTGGGGTTTAAATTTATTGAAAAGAAATTTGATAGTATTTCTGATGGAAGAAAATTTTTGTCAACACAAATTGATGGGAACCAAAGCTTGTTCTATGCTGAAATCCCAGGGGGCACAGTGCTGCTGCATCATGTTGAGGAGAAAGTGAAATTTCCTGCTCAATTTGGACGTGAGGTTCTGGCGGGGTTGCTTAATATGGCAGATAATGCAGATTGGAGGAATAACAAACATAGCAAAGAGGAAGAAATGAAAATTGTGGAAGGTTTCAAGAGCCGATTCCAAGAATATGATCCCAACTGTTGA 1803 0.421 MAPRILLCGDVLGRLNLLLKRVSSVNKSAGPFDALLCVGQFFPDSPDQLDEFMSYIEGRSQSQFPLPIYFIGDYGIGAPNVLLKASKDSSNLGFKMDGFRICHNLYWLKGSGKFSLFGLSVVYLSGIKSPNAQQFGTYSQDDVDALRAIAEEPGIIDLGVTKEAATSDIPSGLSDSVGSDSTISELVQEIKPRYHIVGTKGIYYAREPYSNVDAVHVTRFIGLASVGNRDKQKFIHAISPTPASTMSSMEIAMKTTNTTLSPYTFVEKSTSPKDGSKRSSDGISDSQHWRYDVSQKRQKHGAENGNKLCFKFVSSGSCPRGEECYFRHNSDAREQSMRGVCFEFLNKGKCVRGPDCNFKHSLQEEDDRHSSRRPGSENIRSSRSKECWFCLSSPNVESHLIISIGENYYLALAKGPLIDDHVLIIPVEHMPSTLSLASESEVGLFRFQNSLMRYCKNQGKEVIFFEWVSIRGTHANLQAIPIPSSKAVMAVKAFNLAAQKLGFKFIEKKFDSISDGRKFLSTQIDGNQSLFYAEIPGGTVLLHHVEEKVKFPAQFGREVLAGLLNMADNADWRNNKHSKEEEMKIVEGFKSRFQEYDPNC 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1223 600 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 1 599 IPR040194 -
Lal19g1223 600 Gene3D - 381 504 IPR036265 -
Lal19g1223 600 Pfam Protein similar to CwfJ C-terminus 2 510 597 IPR006767 -
Lal19g1223 600 MobiDBLite consensus disorder prediction 271 298 - -
Lal19g1223 600 CDD MPP_CWF19_N 6 226 - -
Lal19g1223 600 Pfam Protein similar to CwfJ C-terminus 1 379 494 IPR006768 -
Lal19g1223 600 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Lal19g1223 600 SUPERFAMILY CCCH zinc finger 306 332 IPR036855 GO:0046872
Lal19g1223 600 SUPERFAMILY HIT-like 385 458 IPR036265 -
Lal19g1223 600 ProSiteProfiles Zinc finger C3H1-type profile. 340 363 IPR000571 GO:0046872
Lal19g1223 600 Gene3D - 292 366 - -
Lal19g1223 600 SMART c3hfinal6 305 330 IPR000571 GO:0046872
Lal19g1223 600 SMART c3hfinal6 337 362 IPR000571 GO:0046872
Lal19g1223 600 MobiDBLite consensus disorder prediction 263 298 - -
Lal19g1223 600 PANTHER CWF19-LIKE PROTEIN 1 1 599 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal19g1223 CwfJ_C_1 1.2e-35 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1223 K24939 - gmx:100782106 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1223 19 15549105 15559004 Lal19g1223 19 15549105 15559004 ECH