Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1210 ATGGTTTGGTTTCAATGCGAAGATTGTGGAGACAACCTCAAAAAACCCAAGTTGGTTGGTCATTTCCGATCTTGCTCCGCTTACAAGCTATCGTGCATTGATTGTGGAGAAATATTTGGGCAAGACACTGTTCAGAATCACACACAGTGTATAACCGAAGCGGAAAAGTATGGTCCAAAAGGCCAAGGCAAAACTTCCAATGTTACACCTTCCAAGCCTAATAATGATAAGCAAAAGCCTGAAGTTGATATTAATGTGGGGCTATCTCAACGGCCTCCATGGTTTTGTAGTCTTTGCAATACAAAAGCTACAAGTCAGCAAACACTCCTTCTCCATGCTGATGGTAAGAAACATAGGGCGAGAGCCCGAGCCGTCCATGCTTCAAAGCAACAAGCAGCCCAGGCAGATAAAGCTACCACTGATGCTAAGATTACAGTGGAGACTGCTACAAATGGTGAGGTGAGAGACGGCAAAAATGCAGACCAGGCAAAATTGCAAGAGTCTTCTAAACAAGACAACTTGAAACCAGAGAATGAAATTTCTTCCGAAAACAAAAAGAGGAAATTCAATGTGTCAGAAGCGGGCCTTGTTAAGAAAAGTAGGAATGGCAATTCAGTTGACAATGAAAATGGGCAAGTAATTCAGGGTGAAGGAGCAGAAGCGGCAAAAGGAGACACAAATAAAATAAAGTGGAAGAAGTTCATAAAATCAGCCTTGAAATCTCACCCTGATGGAATTTTGAAGCTGAAGAAACTGAGAAAAGTTGTCCACAAAGCACTGCAGGAATCAGACATTGTAGTCGATGAATCTGAATTAAGCAAGGCCCTTCAGCAGAAGATCGATTCCAGCTCCAGATTTGCAGTTGAGGGCAAGTACGTGCGATTGGTAGCGTAA 894 0.4273 MVWFQCEDCGDNLKKPKLVGHFRSCSAYKLSCIDCGEIFGQDTVQNHTQCITEAEKYGPKGQGKTSNVTPSKPNNDKQKPEVDINVGLSQRPPWFCSLCNTKATSQQTLLLHADGKKHRARARAVHASKQQAAQADKATTDAKITVETATNGEVRDGKNADQAKLQESSKQDNLKPENEISSENKKRKFNVSEAGLVKKSRNGNSVDNENGQVIQGEGAEAAKGDTNKIKWKKFIKSALKSHPDGILKLKKLRKVVHKALQESDIVVDESELSKALQQKIDSSSRFAVEGKYVRLVA 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1210 297 Gene3D - 1 50 - -
Lal19g1210 297 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Lal19g1210 297 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Lal19g1210 297 MobiDBLite consensus disorder prediction 157 194 - -
Lal19g1210 297 MobiDBLite consensus disorder prediction 197 212 - -
Lal19g1210 297 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 296 IPR039999 GO:0003677
Lal19g1210 297 SMART ZnF_U1_5 91 125 IPR003604 GO:0003676|GO:0008270
Lal19g1210 297 MobiDBLite consensus disorder prediction 57 80 - -
Lal19g1210 297 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Lal19g1210 297 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Lal19g1210 297 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Lal19g1210 297 SUPERFAMILY beta-beta-alpha zinc fingers 81 126 IPR036236 -
Lal19g1210 297 MobiDBLite consensus disorder prediction 132 147 - -
Lal19g1210 297 MobiDBLite consensus disorder prediction 114 219 - -
Lal19g1210 297 Pfam Zinc-finger of C2H2 type 94 118 - -
Lal19g1210 297 Gene3D Classic Zinc Finger 88 136 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1210 65 152 C2H2 Transcription Factor Family AT2G19380 52.273 1.55e-19 87.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1210 19 15472534 15475871 Lal19g1210 19 15472534 15475871 ECH