Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1205 ATGGACGGTGGAACACAATACAACCCTCGCACTGTGGAAGAAGTTTTCAAAGATTTCAAAGGACGTAGGGTTGCAATCATCAAAGCCCTTACCACTGATGTTCACCAATTTTTCCAGCAGTGTGATCCTGAAAAGGATAATTTATGTCTGTACGGCCTCCCAACTGAACAATGGGAGGTTAATTTACCAGCAGAAGAAGTTCCTCCTGAACTTCCCGAGCCTGCTTTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGTTGTCTTTGGTTGCTGTTCATAGTGATGCATGGTTACTTGCTGTAGCTTTCTACTTTGGGGCAAGATTTGGTTTTGATAGAGCAGACAGGAAACGCCTGTTCACTATGGTTAATGATCTACCTACAATTTTTGAGGTGGTAACTGGAACTGCCAAGAAACAAACTATGGAAAAGTCATCCATTTCGAACATCACTGGCAATAAATCAAAGTCTGGTTCAAAAGGGCGAGGATCTGAGTCAGGGAAGTACTCAAAGCTAGCGGAGGAGGAGGAGGAGGAGGTGTTAGTGGAAGATGAGGAGGAGGTGATAGTGGAAGAAGATGAGGAGCATGGGGAGACCTTGTGTGGTGCATGTGGGGAAAACTATGCAACTGATGAGTTTTGGATTTGTTGTGACATATGCGAGAAATGGTTCCATGGAAAATGTGTGAAGATTACTCCTGCCAGGGCTGATCACATCAAGCATTATAAGTGCCCCTCGTGCAGCAATAAGAGAGCACGCCCTTGA 777 0.4505 MDGGTQYNPRTVEEVFKDFKGRRVAIIKALTTDVHQFFQQCDPEKDNLCLYGLPTEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDRADRKRLFTMVNDLPTIFEVVTGTAKKQTMEKSSISNITGNKSKSGSKGRGSESGKYSKLAEEEEEEVLVEDEEEVIVEEDEEHGETLCGACGENYATDEFWICCDICEKWFHGKCVKITPARADHIKHYKCPSCSNKRARP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1205 258 Pfam PHD-finger 205 254 IPR019787 -
Lal19g1205 258 CDD PHD_AL_plant 204 254 IPR044104 -
Lal19g1205 258 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 258 - -
Lal19g1205 258 PANTHER CPG BINDING PROTEIN 3 258 IPR045104 GO:0006355|GO:0042393
Lal19g1205 258 SUPERFAMILY FYVE/PHD zinc finger 196 255 IPR011011 -
Lal19g1205 258 ProSiteProfiles Zinc finger PHD-type profile. 202 254 IPR019787 -
Lal19g1205 258 SMART PHD_3 204 252 IPR001965 -
Lal19g1205 258 MobiDBLite consensus disorder prediction 147 180 - -
Lal19g1205 258 ProSitePatterns Zinc finger PHD-type signature. 205 251 IPR019786 -
Lal19g1205 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 253 IPR013083 -
Lal19g1205 258 MobiDBLite consensus disorder prediction 147 168 - -
Lal19g1205 258 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1205 Lal-Chr19 15441801 15449215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1205 1 257 Alfin-like Transcription Factor Family AT3G42790 72.868 7.09e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lal19g1205 Alfin 9.9e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1205 - - gmx:100500110 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1205 19 15441801 15449215 Lal19g1205 19 15441801 15449215 ECH