Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1202 ATGTTCCTCTTGTTGAATCATACTGATACGGCGTTCAATTGTTCAGAAGTCGATTGCAGTAACTCAATGGCTTATGCTCCTTATCCTTATGATGGTGATCCTTCTTTTGGTGGTTCATTAGTTGCTTACGGACCACATGCTATTAATCAATCCCAAATGTTTCCCCAAATGCTGGGCCTGGGATTAGCATCCACCAGAATTGCATTACCACCTGATTTTGCAGAAGATGGGCCCATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGAAGACAGTCGCGGGCAAAACTTGAGGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCACGAGTCCCGGCACCGCCACGCTTTGAATAGGGTTAGAGGAACTGGCGGACGCTTTCTTAGCGCTAAACAGCTGCAACAATCTAATGCAGAAGTTGTCTCTGGTGCTCATTCGGGCTCAGACCCTGTGAACTTATACCAAAAAAAAGATGCACCTGATGTGGAAAGCCATCCCTCAAGAATGAGAGAAAATGCACCTTCTTCGATCACATCCTGCTCTGATCTAACAACTTTGTCCAGTAACAGTGTCATATTTAGGCAGCATGAACTCCAATTCTTAGGTAACTCCCCAAATATAGGTCTAGGAGCATCACGATGCAGCGGGGGGTTCACCTTTGGTGGCGGCGGAACCAAGCAAAATTAA 702 0.4473 MFLLLNHTDTAFNCSEVDCSNSMAYAPYPYDGDPSFGGSLVAYGPHAINQSQMFPQMLGLGLASTRIALPPDFAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGTGGRFLSAKQLQQSNAEVVSGAHSGSDPVNLYQKKDAPDVESHPSRMRENAPSSITSCSDLTTLSSNSVIFRQHELQFLGNSPNIGLGASRCSGGFTFGGGGTKQN 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1202 233 Gene3D - 75 137 - -
Lal19g1202 233 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 218 IPR001289 GO:0003700|GO:0006355
Lal19g1202 233 MobiDBLite consensus disorder prediction 147 182 - -
Lal19g1202 233 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 78 132 IPR001289 GO:0003700|GO:0006355
Lal19g1202 233 ProSitePatterns NF-YA/HAP2 subunit signature. 80 100 IPR018362 GO:0003677|GO:0016602
Lal19g1202 233 SMART cbf3 74 135 IPR001289 GO:0003700|GO:0006355
Lal19g1202 233 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 2 218 - -
Lal19g1202 233 PRINTS CCAAT-binding transcription factor subunit B signature 78 100 IPR001289 GO:0003700|GO:0006355
Lal19g1202 233 PRINTS CCAAT-binding transcription factor subunit B signature 109 132 IPR001289 GO:0003700|GO:0006355
Lal19g1202 233 ProSiteProfiles NF-YA/HAP2 family profile. 75 135 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1202 Lal-Chr19 15432466 15435623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1202 15 203 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.786 1.39e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lal19g1202 CBFB_NFYA 3.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1202 K08064 - gmx:100792905 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1202 19 15432466 15435623 Lal19g1202 19 15432466 15435623 ECH