Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1200 ATGCTTACATGCATAACTCGTTCCAAGAAACCCGGGAACGACTCAGTGAGTAAACCTGAGGAGTCAGACGGAAACGCTGCTAAAAACCAAGCCGTCAAATCTATCACTTCTCAGATAAAGGATATGGCGTTGAAGGCACCGATGGCGTACAAGCACTGCGCTCCGTTCACGGGGCCACCGGATCAGGGTGGTGGATTGAGGAGCAACACTGAATCGGATCGTTTCCGATGGTCGTATTGGAGAACTGGAACCTCGACGAGAACACGGCGGAAGGAGATGGAGACGAGGCTGAAGGGGATATCAACCAGGGAGGGGACGCCGGAATCCGCCAGTGGACGGCGGATGGTGCTGTTCGTTGAAGAGAAGGAACCGGAGGAGTGGGTGGCGCAAGTGGAGCCTGGCGTTTTGATAACATTCGTGTCGCTTCCACGTGGCGGGAACGATCTTAAGAGCATACGGTTCAGTCTGGACATGTTTAATAAATGGCATGCTCAAAAGTGGTGGTCAGACAACTATGACAAGGTCATGGAACTTTACAATGTTCAAAGGCTTAACCGTCATGCCTTCCCTCTTCCAACGCCACCAAGATCTGAAGATGAGAGCTCAAAGTTTGAATCAGCAGAAGCTAGCCCTGTAACACCACTAACCAAAGAACGGTTACCTTGTACTTTGTACCGCCCAACAGGGATGGGAATGGAGTATTCGTCCTCAGATTCCTTTGATCATCAATCAATGCACTCCCCGCAGTTCACTGACTCAACTACTGGTATGAGCTCAACCCCAGAAGCTTCCACCATTAGTACGGCCAAGACAGAGTTATCATCGGCACATGCTTCTATCATAAATAGCCCATCCAGAGATGCTGATCGCTCTTGTGATCTATCAAACAGCAATGATGGTGATTTGGAGACTGAATGGGTTGAGCAGGATGAACCCGGGGTTTACATTACCATCAGAGCATTGGCAGGTGGCAAAAGGGAGCTCAGGCGAGTCAGGTTCAGGTATGCTCCCAGTTCATTGCTATCCGAGAAAAATTTGGGGAGGGGCATGCTACATTATGGTGGGAGGAGAACCGTGCTAGAATACATGAACAATACTTGTGAAATTTTGCTAAAGGTTGAGGATAGGGGGCTGCAAAAGCATTACATAAGGTGGAGTTGGTGTTGCTTATTAAATTGTTCAATAATTTTTTTGCTAAAACAAGTCAAAAGAAATGGTACTTACACTCTGCTTTTTTTGGGTTATTTAGTTCCCTATTCAAATTTCTCATCTCTTAGTGGGATAAGTTCAGGTTATTCAATTGGTAAATATTGTTTCTATTAG 1323 0.4679 MLTCITRSKKPGNDSVSKPEESDGNAAKNQAVKSITSQIKDMALKAPMAYKHCAPFTGPPDQGGGLRSNTESDRFRWSYWRTGTSTRTRRKEMETRLKGISTREGTPESASGRRMVLFVEEKEPEEWVAQVEPGVLITFVSLPRGGNDLKSIRFSLDMFNKWHAQKWWSDNYDKVMELYNVQRLNRHAFPLPTPPRSEDESSKFESAEASPVTPLTKERLPCTLYRPTGMGMEYSSSDSFDHQSMHSPQFTDSTTGMSSTPEASTISTAKTELSSAHASIINSPSRDADRSCDLSNSNDGDLETEWVEQDEPGVYITIRALAGGKRELRRVRFRYAPSSLLSEKNLGRGMLHYGGRRTVLEYMNNTCEILLKVEDRGLQKHYIRWSWCCLLNCSIIFLLKQVKRNGTYTLLFLGYLVPYSNFSSLSGISSGYSIGKYCFY 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1200 440 MobiDBLite consensus disorder prediction 236 276 - -
Lal19g1200 440 ProSiteProfiles BRX domain profile. 304 361 IPR013591 -
Lal19g1200 440 Pfam Transcription factor regulating root and shoot growth via Pin3 303 334 IPR013591 -
Lal19g1200 440 Pfam Transcription factor regulating root and shoot growth via Pin3 125 179 IPR013591 -
Lal19g1200 440 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 335 IPR044532 -
Lal19g1200 440 ProSiteProfiles BRX domain profile. 125 180 IPR013591 -
Lal19g1200 440 MobiDBLite consensus disorder prediction 281 300 - -
Lal19g1200 440 MobiDBLite consensus disorder prediction 1 32 - -
Lal19g1200 440 PANTHER PROTEIN BREVIS RADIX-LIKE 4 1 335 - -
Lal19g1200 440 MobiDBLite consensus disorder prediction 190 212 - -
Lal19g1200 440 Pfam Transcription factor BRX N-terminal domain 21 56 IPR027988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1200 Lal-Chr19 15419632 15423684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1200 1 333 Major Intrinsic Protein MIP AT1G31880 37.151 2.28e-59 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1200 - - gmx:100794109 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1200 19 15419632 15423684 Lal19g1200 19 15419632 15423684 ECH
Lal14g1661 14 16862528 16868061 Lal19g1200 19 15419632 15423684 LSH
Lal19g1200 19 15419632 15423684 Lal4g1530 4 19408366 19421813 PCT
Lal4g1530 4 19408366 19421813 Lal19g1200 19 15419632 15423684 PCT