Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1199 ATGTCATCACCACCTGCCACCTTTTCCAAAACAAACAAATCCAGCATGCCCATGTTATACTATGGTTTAGCAATGGTTGGAGCTGCATCAATAGCACTAATCTTATACAATCTCATCACAATCATTACCAAAATGTGCAACCAGAGCCAGTTGCAATCATCACAAGATGAAGTAGTTGATGTGGCCATAGGAAGCAGTAGCATGAGCTTTGATAATTCAAGAGGGAACTTGCTTTCAAGCTATAAGTATAAGAAAGAAGGTGGTGGTGGTGGTGGTGGATATGATTATGAATGTTCAGTTTGCTTATCTGATTTAGAAGAAGGAGAAGAGGTGAAGAAGCTACCAAGGTGCAAACACTCTTTCCATCTTCAATGCATTGATATGTGGCTTCATTCTCACCATGATTGCCCACTTTGTAGAACTCCTGTTGGGCCTTCTTCTCACCATTTCACACCAGAGAATGTAACTCAAGTCATGCTGGCAACAGGTGGCATCTTAGTTTGA 504 0.4127 MSSPPATFSKTNKSSMPMLYYGLAMVGAASIALILYNLITIITKMCNQSQLQSSQDEVVDVAIGSSSMSFDNSRGNLLSSYKYKKEGGGGGGGYDYECSVCLSDLEEGEEVKKLPRCKHSFHLQCIDMWLHSHHDCPLCRTPVGPSSHHFTPENVTQVMLATGGILV 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1199 167 SMART ring_2 98 139 IPR001841 -
Lal19g1199 167 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 3 151 - -
Lal19g1199 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 148 IPR013083 -
Lal19g1199 167 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Lal19g1199 167 SUPERFAMILY RING/U-box 95 149 - -
Lal19g1199 167 Pfam Ring finger domain 97 140 IPR001841 -
Lal19g1199 167 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 151 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1199 Lal-Chr19 15418221 15418724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1199 23 143 C3H Transcription Factor Family AT5G17600 39.098 1.46e-22 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1199 - - aprc:113852327 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1199 19 15418221 15418724 Lal19g1199 19 15418221 15418724 ECH
Lal19g1199 19 15418221 15418724 Lal17g1504 17 16447407 16447970 PCT
Lal17g1504 17 16447407 16447970 Lal19g1199 19 15418221 15418724 PCT