Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1193 ATGACTGTGATGAAAATCACATGGAAAACTATCTTCCCAAGTTGTTATAAGAATGATGATGATTTTCTATCACCAAAACCCAATAAAGTGGTGGCTTCACCTCCAAATACAACAAAGCCTAGTGGTTCTTTAAGCAGAATCACTGTGAGTGATTTGAGTTTTCCAAGCACAACATTTTCAGAGGATCTATCCATTTCTCTAGCAGGGTCTAACCTGCATGTTTTTTCACTTGCTGAGCTCAAGATTATAACACAAGGCTTCTCTTCAAGTAACTTTTTAGGAGAAGGAGGTTTTGGACCAGTGCATAAGGGGTTCATTGATGATAAGCTTAGGCCTGGTCTCAAGGCTCAACCTGTTGCTGTAAAGCTCTTAGATTTAGATGGATCCCAGGGTCATAAAGAGTGGTTGACTGAAGTTGTGTTTCTGGGTCAACTAAGGCATCAGCACCTTGTGAAGTTGATTGGATATTGCTGTGAAGAGGAACACAGGCTTTTGGTATATGAATATTTACCAAGGGGGAGCTTAGAGAATCAACTTTTTAGAAGATACTCAGCATCATTACCATGGTCAACAAGAATGAAAATAGCTGTTGGAGCTGCAAAAGGTCTAGCCTTTTTACATGAGGCACAAAAACCAGTCATCTATAGAGATTTTAAAGCTTCAAATGTATTGTTAGACTCAGATTATGGTGCAAAACTTTCAGATTTAGGGTTGGCAAAAGATGGTCCTGAAGGAGATGATACCCATGTTTCAACTAGAGTTATGGGCACCCAAGGCTATGCTGCCCCAGAATATATCATGACAGGTCACTTGACAGCAATGAGTGATGTGTATAGTTTTGGAGTGGTACTATTGGAGCTACTAACAGGTAGAAGGTCAGTGGATAAAGGGCGCCCACAAAGAGAACAGAACCTAGTGGAATGGGCTAGGCCATACTTGAATGATTTCAGAAAACTAAGCAGAATAATGGATCCAAGGCTTGAGGGTCAGTATTCTGAGATGGGGGCAAAAAAAGCAACAGCATTGGCTTATTTATGCCTTAGCCATAGGCCTAGGAGTAGGCCAACAATGACCACAGTGGTTAAGACTCTAGAGCCACTTCAAGATTTTGATGATATACCAATTGGTCCTTTTGTTTACACTGTTCCAAGTGATAATGGTGAAAGTCATAAAGATGCAAAAGAAAGTGATACACCTAAGGAAGAAAGGAAGAAGGAAAATGGTGGTCATCACCATCATCATCACCGGAATCACCACCGCAACCACGGCCATAGGCATCCTCTTAGAACTCCTAAGACAACAAACTCAATGTCACAGAATGATAAACACCAAAATGGTACAAGTGGATCAACCTCATCTGATACATCCACTGCATCAGAAAGCCAAGGAAGCCAAGTTTAG 1401 0.4104 MTVMKITWKTIFPSCYKNDDDFLSPKPNKVVASPPNTTKPSGSLSRITVSDLSFPSTTFSEDLSISLAGSNLHVFSLAELKIITQGFSSSNFLGEGGFGPVHKGFIDDKLRPGLKAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHQHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRYSASLPWSTRMKIAVGAAKGLAFLHEAQKPVIYRDFKASNVLLDSDYGAKLSDLGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKGRPQREQNLVEWARPYLNDFRKLSRIMDPRLEGQYSEMGAKKATALAYLCLSHRPRSRPTMTTVVKTLEPLQDFDDIPIGPFVYTVPSDNGESHKDAKESDTPKEERKKENGGHHHHHHRNHHRNHGHRHPLRTPKTTNSMSQNDKHQNGTSGSTSSDTSTASESQGSQV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1193 466 MobiDBLite consensus disorder prediction 430 466 - -
Lal19g1193 466 PANTHER OS01G0588500 PROTEIN-RELATED 32 421 - -
Lal19g1193 466 CDD STKc_IRAK 93 367 - -
Lal19g1193 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Lal19g1193 466 MobiDBLite consensus disorder prediction 407 429 - -
Lal19g1193 466 Gene3D Phosphorylase Kinase; domain 1 48 169 - -
Lal19g1193 466 Pfam Protein tyrosine and serine/threonine kinase 91 364 IPR001245 GO:0004672|GO:0006468
Lal19g1193 466 MobiDBLite consensus disorder prediction 378 466 - -
Lal19g1193 466 SUPERFAMILY Protein kinase-like (PK-like) 62 365 IPR011009 -
Lal19g1193 466 MobiDBLite consensus disorder prediction 387 406 - -
Lal19g1193 466 ProSiteProfiles Protein kinase domain profile. 87 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal19g1193 466 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 32 421 - -
Lal19g1193 466 Gene3D Transferase(Phosphotransferase) domain 1 170 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1193 Lal-Chr19 15348507 15351211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1193 73 364 Glycoside Hydrolase AT3G07070 52.542 9.07e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal19g1193 PK_Tyr_Ser-Thr 3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1193 - - gmx:100305397 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1193 19 15348507 15351211 Lal18g0113 18 906732 909570 ECH
Lal19g1193 19 15348507 15351211 Lal4g0184 4 1152221 1154492 ECH
Lal19g1193 19 15348507 15351211 Lal17g0175 17 1063852 1071060 ECH
Lal19g1193 19 15348507 15351211 Lal19g1193 19 15348507 15351211 ECH
Lal7g1050 7 16637408 16639756 Lal19g1193 19 15348507 15351211 LSH
Lal19g1193 19 15348507 15351211 Lal17g1494 17 16375334 16382295 PCT
Lal17g1494 17 16375334 16382295 Lal19g1193 19 15348507 15351211 PCT