Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1186 ATGTCGAGCTCGTCGGAGATTTCAGGTGTTTCCGGTGAGAAGCCACCGGAGAAGTCTACGTTCTCTCAGACTTGTAGTTTGTTGAGCCAATACCTTAAGGAGAAGGGTAGCTTCGGTGATCTTACACTTGGGATGACATGCACCACTGAAACAAATCGGTCACCTGAGACATCTTGTCTCACTGCAATGGACTTGTTTCCTAACAAGGAAAACAACATGACACACCAAAACCTGACAACTATGGATTTTCTCTCTCCACACTCAACAAAAAAGGTTCCAACTTTGGTCAATCCAAGTGCATTTAAGTCTTTGTTCAAGGATCCCAAAGCTGCACAATTGACAATCTTTTATGGGGGCCAAGTTAATGTGTATGATGATTTTCCTGCTGATAAAGTTGAGGAGATAATGTCCTTTGCTAGAAAAGGAATCTCTCAAAACCAGAATACCTCTCTGCATGCTCATACTCAGCCTTCAATGATTCAGGAGCACACTCATGCACCACCCTCACCAATTGTTTGTGATCTACCCATTGCTAGGAAAGCTTCCCTTCATCGTTTCCTTGAGAAGAGGAAGGATAGAATTGCTGCTAAAGCTCCATATCAGAAAAGCAATCCCATGGCAGCACCTAATAAGCCAGCTGAATCAATGGCATGGCTTGGCTGCTAA 666 0.4369 MSSSSEISGVSGEKPPEKSTFSQTCSLLSQYLKEKGSFGDLTLGMTCTTETNRSPETSCLTAMDLFPNKENNMTHQNLTTMDFLSPHSTKKVPTLVNPSAFKSLFKDPKAAQLTIFYGGQVNVYDDFPADKVEEIMSFARKGISQNQNTSLHAHTQPSMIQEHTHAPPSPIVCDLPIARKASLHRFLEKRKDRIAAKAPYQKSNPMAAPNKPAESMAWLGC 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1186 221 Pfam Jas motif 176 201 IPR018467 -
Lal19g1186 221 SMART tify_2 106 141 IPR010399 -
Lal19g1186 221 Pfam tify domain 108 139 IPR010399 -
Lal19g1186 221 ProSiteProfiles Tify domain profile. 106 141 IPR010399 -
Lal19g1186 221 PANTHER PROTEIN TIFY 10A 17 220 - -
Lal19g1186 221 MobiDBLite consensus disorder prediction 1 21 - -
Lal19g1186 221 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 17 220 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1186 Lal-Chr19 15294520 15297914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1186 1 220 Tify Gene Family AT1G19180 40.711 6.08e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lal19g1186 tify 6.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1186 K13464 - gmx:100802800 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1186 19 15294520 15297914 Lal19g1186 19 15294520 15297914 ECH
Lal14g1638 14 16747697 16752164 Lal19g1186 19 15294520 15297914 LSH
Lal7g1044 7 16583394 16585491 Lal19g1186 19 15294520 15297914 LSH
Lal19g1186 19 15294520 15297914 Lal17g1483 17 16279601 16282714 PCT
Lal19g1186 19 15294520 15297914 Lal21g1182 21 14630503 14633553 PCT
Lal19g1186 19 15294520 15297914 Lal4g1510 4 19273028 19276359 PCT
Lal17g1483 17 16279601 16282714 Lal19g1186 19 15294520 15297914 PCT
Lal21g1182 21 14630503 14633553 Lal19g1186 19 15294520 15297914 PCT
Lal4g1510 4 19273028 19276359 Lal19g1186 19 15294520 15297914 PCT