Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1184 ATGGTGAAGGCAAACATGGAAAACATGAAGGAGCAAAATGATTCAAGTTTTCAGTTCAAGGGTGTTCGAAAGAGAAAGTGGGGGAAATGGGTGTCAGAAATTAGACTACCGAATAGTCGTCAAAGGATTTGGTTAGGATCATTTGATTCAGCTGAGAAAGCCGCACGTGCTTTTGATGCAGCTACATTCTGCTTACGTGGCAGGAACGCAAGGTTTAATTTCCCCGATAACCCACCTGATATTGTTGGTGGCATGTCCATGACACCTTCTCAAATTCAAGCTGCTGCAGCCAGTTTCGCAAATTCGGAGCCCCATTTGACACATTCGGGTCGACCCGCTAAAACTGAATCACATGTAGAATGTTCTTCGGAGGGGACAATGTTGTTGCATACGGAGTCACCTTCTCAGTGTTTTTCAGAAGGGACAGTACAAACGGATAGTGATGTCACGTTTAACGGTATGTTCCCAGATTTGTTTGCACATGAGTATGGGATATTTCCAGGTTTTGATGAATTTAACGGTCACTACTATGTTCCTGAAATGGAGACTGAGAACTATTATGGAGAAGATAACATGGATGGTTTGACAGTTAATGACTCCTACTTGTGGAATTTCTAA 618 0.4272 MVKANMENMKEQNDSSFQFKGVRKRKWGKWVSEIRLPNSRQRIWLGSFDSAEKAARAFDAATFCLRGRNARFNFPDNPPDIVGGMSMTPSQIQAAAASFANSEPHLTHSGRPAKTESHVECSSEGTMLLHTESPSQCFSEGTVQTDSDVTFNGMFPDLFAHEYGIFPGFDEFNGHYYVPEMETENYYGEDNMDGLTVNDSYLWNF 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1184 205 Pfam AP2 domain 19 67 IPR001471 GO:0003700|GO:0006355
Lal19g1184 205 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Lal19g1184 205 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Lal19g1184 205 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Lal19g1184 205 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Lal19g1184 205 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Lal19g1184 205 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 4 205 - -
Lal19g1184 205 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Lal19g1184 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 205 - -
Lal19g1184 205 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1184 Lal-Chr19 15279830 15280447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1184 18 205 AP2-EREBP Transcription Factor Family AT1G19210 47.236 8.92e-52 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal19g1184 AP2 7.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1184 - - gmx:732656 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1184 19 15279830 15280447 Lal19g1184 19 15279830 15280447 ECH