Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1183 ATGGCAACTTCTCAGCTCACAGCATCATCGATTTCTAGCAGAAATTTGCCATTATTTGAAGGGTTTCGACTTTCATCTCTTCAATTTTCTTCTATCAACCATTTAAGAATGGACACTCTTACCCAAAAATCGTTCCCAAGTTTTGTTGTCAAAGCCTCCACTGTTTCTGCCCTCAAGTACACTTCTATTAAGCCTCTAGGTGATAGAGTGCTTGTCAAAATTAATGAAGCGGACGAGAAGAGTGAGGGTGGGATTATACTCCCAACAACTGCTCAAACGAAGCCTCAAGGGGGCGAGGTGGTTGCTGTTGGAGAAGGAAAGTCAGTTGGGAAGAGCAAAGTGGAAATTAGTGTCAAGACAGGGGCAAAAGTTGTGTATTCAAAGTATGTAGGGACTGAGGTGGAGTTCAATGGCTCAAAACATCTTATACTGAAGGATGATGATATTATTGGTATCCTTGAAACCGATGAGGTCAAGGATCTTAAACCCCTGAATGATAGAGTCTTGATACAGGTTGCACAAGCAGAAGAGAAAACTGCTGGGGGTTTGTTTCTCACCGATGCAACAAAGGATAAACCGTCTATTGGAACAGTGATAGCAGTAGGTCCAGGTTCTGTGGATGAAGAAGGCAATAAAACACCATTATCAGTTACAACTGGGAACACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAGAGCAAAGATGGTTTTGAATACGTTACGTTGAGGGCCTCAGATGTTATTGCTGTCCTCTCCCAGTGA 768 0.4232 MATSQLTASSISSRNLPLFEGFRLSSLQFSSINHLRMDTLTQKSFPSFVVKASTVSALKYTSIKPLGDRVLVKINEADEKSEGGIILPTTAQTKPQGGEVVAVGEGKSVGKSKVEISVKTGAKVVYSKYVGTEVEFNGSKHLILKDDDIIGILETDEVKDLKPLNDRVLIQVAQAEEKTAGGLFLTDATKDKPSIGTVIAVGPGSVDEEGNKTPLSVTTGNTVLYSKYAGNDFKSKDGFEYVTLRASDVIAVLSQ 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1183 255 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal19g1183 255 Hamap Co-chaperonin GroES [groES]. 62 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal19g1183 255 ProSitePatterns Chaperonins cpn10 signature. 161 185 IPR018369 GO:0005524|GO:0006457
Lal19g1183 255 Hamap Co-chaperonin GroES [groES]. 160 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal19g1183 255 PANTHER GROES CHAPERONIN 1 254 - -
Lal19g1183 255 SMART Cpn10_2 160 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal19g1183 255 SMART Cpn10_2 62 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal19g1183 255 CDD cpn10 161 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal19g1183 255 ProSitePatterns Chaperonins cpn10 signature. 63 87 IPR018369 GO:0005524|GO:0006457
Lal19g1183 255 PRINTS 10kDa chaperonin signature 63 78 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal19g1183 255 PRINTS 10kDa chaperonin signature 85 106 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal19g1183 255 PRINTS 10kDa chaperonin signature 119 131 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal19g1183 255 PRINTS 10kDa chaperonin signature 140 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal19g1183 255 PIRSF Cpn21 1 254 IPR017416 GO:0006457|GO:0046914|GO:1901671
Lal19g1183 255 Pfam Chaperonin 10 Kd subunit 63 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal19g1183 255 Pfam Chaperonin 10 Kd subunit 161 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal19g1183 255 SUPERFAMILY GroES-like 160 253 IPR011032 -
Lal19g1183 255 SUPERFAMILY GroES-like 61 154 IPR011032 -
Lal19g1183 255 Gene3D GroES chaperonin 56 156 IPR037124 GO:0006457
Lal19g1183 255 Gene3D GroES chaperonin 157 255 IPR037124 GO:0006457
Lal19g1183 255 CDD cpn10 62 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1183 Lal-Chr19 15269394 15272104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1183 1 254 Calmodulin-binding Proteins AT5G20720 69.531 1.71e-126 357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1183 19 15269394 15272104 Lal19g1183 19 15269394 15272104 ECH
Lal7g1043 7 16571606 16581855 Lal19g1183 19 15269394 15272104 LSH
Lal19g1183 19 15269394 15272104 Lal17g1481 17 16247582 16250450 PCT
Lal19g1183 19 15269394 15272104 Lal21g1179 21 14532484 14536024 PCT
Lal19g1183 19 15269394 15272104 Lal4g1506 4 19222039 19229095 PCT
Lal17g1481 17 16247582 16250450 Lal19g1183 19 15269394 15272104 PCT
Lal21g1179 21 14532484 14536024 Lal19g1183 19 15269394 15272104 PCT
Lal4g1506 4 19222039 19229095 Lal19g1183 19 15269394 15272104 PCT