Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1176 ATGCCTCCCATCACCTTCACCTTCATCTTCATACTGATGTTGATCCTTGGAATCTTCACCCCATTGAGTTCTAATGCTCGAACCACTCATTTAGCAGGATCACCACAACTCAATGTTTCTCCTTCTGAATTTGTTGGGCTAGTGAAGCAAGTTCTTGATGTTTTGAAACAGGTTTCATCCATTTTATCTAAGTTCAGTAGTGGCTTGGGAGATTCTCGTCTTTCTCATGCCATTTATGATTGTCTTGAATTGCTTGATTTATCCTCTGATGAACTCACTTGGTCTCAATCCGCTACACAAGCTCCCAAAGGGAAGCATAACAGCACAGGGGACCTGAGCTCAGATTTAAGGACATGGTTAAGTGGTGTCCTTACAAATCCAGAGACATGTTTGGAGGGATTTGAAGGAACCAACAGCATTGTTAAGGGTCTAGTTTCAGTAGGGCTAAGCCAGGTATCATCATTGGTGAAGCAGCTTCTAGCACAGGTGCACCCTACCATAGAGGATAAACCCTTCAACAAGGATCAGTACTACCCTTCATGGATGAAACAAAGGGAAAGAAACCTGATACAATCAAATGGTGTGGCTGCAGATGCTGTTGTGGCTTTAGATGGAAGTGGTAACTATAGCAATGTGATGGATGCTGTGGTAGCAGCACCAGATTATAGCATGAAAAGACATGTGATATATATAAAGAAGGGTGTTTATAATGAATATGTTGAGATTAAAAAGAAGAAATGGAATATTATGATTATTGGAGATGGTATTAATGCCACTTTTATATCTGGTAACCGAAGTTTTATTGATGGATGGACCACATTCAGATCAGCTACCTTTGCTGTCAGTGGAAGAGGGTTCTTAGCAAGAGACATCACTTTCCAGAACACTGCAGGCCCAGAGAAGCATCAAGCAGTAGCACTGAGATCAGATTCAGACTTATCAGTATTCTACAAATGTGGCATTTATGGTTACCAAGATAGCCTCTATACTCACACAATGCGCCAATTCTATAGAGAATGCAGAATAAGTGGCACAGTTGATTTCATATTTGGTGATGCCACTGCAGTGTTCCAAAACTGCCAAATCCTAGCAAAAAAAGGATTACCAGAGCAAAAGAACACAATCACAGCACAAGGTAGAAAAGACCCTAATGAACCAACTGGTTTCTCAATCCAATTCAGCAACATCACTGCAGATTATGACCTTGTACCATTTATTAACACTACACAAACATATCTTGGGAGACCATGGAAGACATATTCACGTACCATTTTCATGCAATCATATTTGAGTAATGTTATAAGGCCAGAAGGGTGGTTAGAATGGAATGGTAATTTATATTTGGACACATTGTACTATGCTGAGTACTTGAATTACGGACCAGGTGCTGGATTATCTAATAGGGTGAATTGGACAGGGTACCATGTATTAAATGATTCTAGCATAGCTAGTAATTTCACTGTCACACAATTTATTGAAGGGAATCTATGGTTACCTTCCACAGGCGTGGCTTACACTGCTTGA 1524 0.4029 MPPITFTFIFILMLILGIFTPLSSNARTTHLAGSPQLNVSPSEFVGLVKQVLDVLKQVSSILSKFSSGLGDSRLSHAIYDCLELLDLSSDELTWSQSATQAPKGKHNSTGDLSSDLRTWLSGVLTNPETCLEGFEGTNSIVKGLVSVGLSQVSSLVKQLLAQVHPTIEDKPFNKDQYYPSWMKQRERNLIQSNGVAADAVVALDGSGNYSNVMDAVVAAPDYSMKRHVIYIKKGVYNEYVEIKKKKWNIMIIGDGINATFISGNRSFIDGWTTFRSATFAVSGRGFLARDITFQNTAGPEKHQAVALRSDSDLSVFYKCGIYGYQDSLYTHTMRQFYRECRISGTVDFIFGDATAVFQNCQILAKKGLPEQKNTITAQGRKDPNEPTGFSIQFSNITADYDLVPFINTTQTYLGRPWKTYSRTIFMQSYLSNVIRPEGWLEWNGNLYLDTLYYAEYLNYGPGAGLSNRVNWTGYHVLNDSSIASNFTVTQFIEGNLWLPSTGVAYTA 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1176 507 SUPERFAMILY Pectin lyase-like 194 506 IPR011050 -
Lal19g1176 507 CDD PMEI-like_4 3 165 - -
Lal19g1176 507 Gene3D - 192 507 IPR012334 -
Lal19g1176 507 Pfam Plant invertase/pectin methylesterase inhibitor 51 157 IPR006501 GO:0004857
Lal19g1176 507 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 164 IPR035513 -
Lal19g1176 507 PANTHER PECTINESTERASE 39 168 - -
Lal19g1176 507 PANTHER PECTINESTERASE 173 507 - -
Lal19g1176 507 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 173 507 - -
Lal19g1176 507 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 39 168 - -
Lal19g1176 507 SMART PMEI_2 21 162 IPR006501 GO:0004857
Lal19g1176 507 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 158 IPR035513 -
Lal19g1176 507 ProSitePatterns Pectinesterase signature 2. 342 351 IPR033131 -
Lal19g1176 507 Pfam Pectinesterase 198 495 IPR000070 GO:0030599|GO:0042545
Lal19g1176 507 ProSitePatterns Pectinesterase signature 1. 223 242 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1176 Lal-Chr19 15217761 15223903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1176 7 507 Carbohydrate Esterase AT3G43270 61.284 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1176 K01051 - gmx:100777500 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1176 19 15217761 15223903 Lal4g1489 4 19054917 19057796 PCT
Lal4g1489 4 19054917 19057796 Lal19g1176 19 15217761 15223903 PCT