Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1171 ATGTTTGTTGTCTTTCCAGAAGTTCCTGTTATGGAGAGTAGTGGTGATAGTAATGTTCATGGAACTAATGTCAACATGGCTGATGATGCTTTAGTCATGCATTCCTTTAATAACTGGTCAGCACCATCATCCGAACCGAATGCAGTGAATCCTAGTACAACTCAGTTTACCATCTTTTACAATGGGAATATTTGTGTCTATAATGGAATTCCTGCAGAAAAGGTGCGTGAAATCATGCTTATTGCCGGTGCCTCTGCCAAGTCGGCTGAAGTCAAAAAAGAGAACCCTTTCGCGTCAAGCATTCCCACAGGTCCTTCTTCTCCAGAAGGAACCTCTAGCAATCTGGCTTCACAGCAATCAGTTTGCTTTCCTGCAGAGAAGAATCCCATTTGCAGGCTGCAAGAGTTTCCCCTAGCACGCAGACAATCACTTCAAAGCTTTCTTGAGAAGCGGCGAGACAGGTTGGCTAGCAAAGTCCCTTATGCCTCATCAACAATAAAAGCTGCTGATAACAACATAGAGAACAACTTCTATGCTGATAATAATGCACCAAAGGAGGGATTTCAGCCAAGTATTGCAGCCTCTTGA 588 0.4354 MFVVFPEVPVMESSGDSNVHGTNVNMADDALVMHSFNNWSAPSSEPNAVNPSTTQFTIFYNGNICVYNGIPAEKVREIMLIAGASAKSAEVKKENPFASSIPTGPSSPEGTSSNLASQQSVCFPAEKNPICRLQEFPLARRQSLQSFLEKRRDRLASKVPYASSTIKAADNNIENNFYADNNAPKEGFQPSIAAS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1171 195 Pfam tify domain 51 83 IPR010399 -
Lal19g1171 195 PANTHER DIVERGENT CCT MOTIF PROTEIN 13 178 - -
Lal19g1171 195 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 178 IPR040390 -
Lal19g1171 195 ProSiteProfiles Tify domain profile. 49 84 IPR010399 -
Lal19g1171 195 SMART tify_2 49 84 IPR010399 -
Lal19g1171 195 Pfam Jas motif 137 161 IPR018467 -
Lal19g1171 195 MobiDBLite consensus disorder prediction 92 115 - -
Lal19g1171 195 MobiDBLite consensus disorder prediction 99 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1171 Lal-Chr19 15174269 15177450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1171 6 170 Tify Gene Family AT5G20900 34.911 1.77e-22 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lal19g1171 tify 2.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1171 K13464 - gmx:100306045 164.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1171 19 15174269 15177450 Lal17g1460 17 15980979 15984402 PCT
Lal17g1460 17 15980979 15984402 Lal19g1171 19 15174269 15177450 PCT