Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1166 ATGTGCAAAAGAAGCAAGAGTTTTGGAGGCATGAACCTGCTTTGGGTGTTCTGGTTTATTGGCCTAGTTGTTTTGAATTTGGTACAAGGCTTGGAAAATGGTAATGTCACAGACATGAAATATGGGGGGAGAGGCTTCTATAACAGACCTTTGCTGGTTGGTCTTACTCTTATTAATGGTGCTGCTGCCAAAGGAGCTGTGTGTCTGGATGGATCTTTACCAGGTTATCACTTCCACAGAGGATATGGTTCAGGATCAAACAGTTGGCTCATACAATTAGAGGGAGGAGGATGGTGCGGAAATATCCGAAATTGTGTTTACAGTAAGAGAACACGTCATGGTTCCTCGTTACATATGGAAAAACAAATACCATTTATTGGTATATTGAGCAACAAAGCTGCGGAAAATCCAGATTTCTTCAATTGGAATAGAATAAAAGTTCGTTATTGCGATGGTGCATCATTTAGTGGGGACAGCCAACATGAGGCTGCAGGACTATATTTTAGAGGACAGCGCATCTGGCATGCTGCAATGGACGATTTAATGTCAAAAGGAATGCGCTATGCCAAACAGGCTCTCCTATCTGGATGTTCTGCAGGAGGTTTAGCGTCTATACTACATTGTGATGAATTTCGGGAATTGTTTCCTAGAACCACAAGAGTAAAGTGCTTAAGCGATGCTGGATTGTTCCTTGATACTGTCGATGTATCTGGCCGTCGCAGTTTGAGGAATTTGTTTGGAGGTGTGGTCACCTTACAGTGCTTTTTCCCTCAGCGCTTAATTGCCAGTGTTAGGACACCACTATTTCTTCTCAATGCAGCTTATGATACTTGGCAGATTCAAGCCAGTCTAGCTCCACCATCTGCCGATTATCGCTGGAATTGGAATGACTGCAGAAAAAACTATGCACGGTGCAGTCGACCTCAGCTAAAGTATCTGCAAGGTTTTCGAAATCAGATGCTCGGAGTTGTAAGAGGCTTCTCGAGGTCTCATCAAAACGGGTTATTCATAAATTCATGTTTTGCTCATTGCCAAGCTGAAAGACAGGATACATGGTTTGCTCATGATTCTCCTCATATTGGAAATAGAGTTTTGGGTCAAAGTTTTGGTTTAAGACGTGGTATTTCACTTGTGGCTCTCCATTCTTCCCATGCCCCTGTAACAATGAGACTCCTCAGTGTTTGGAGTCTTCCCAGTCGTGGCCGAGTCCAACAATATGAACATAATTACATGGGCAGGGTATTGCTCAGTCTGTTGGTAATTGGTTTTTTGACCGAGTTGGAGTTCAGGCTATTGGATGTCCCTACCCTTGTGACAAAACCTGCCACAATTTGGTTTTCAACTGATTTAATGATGTTCTTCTCTTACATTGCCAATGAAAAGCAACCTCTAATATAG 1398 0.427 MCKRSKSFGGMNLLWVFWFIGLVVLNLVQGLENGNVTDMKYGGRGFYNRPLLVGLTLINGAAAKGAVCLDGSLPGYHFHRGYGSGSNSWLIQLEGGGWCGNIRNCVYSKRTRHGSSLHMEKQIPFIGILSNKAAENPDFFNWNRIKVRYCDGASFSGDSQHEAAGLYFRGQRIWHAAMDDLMSKGMRYAKQALLSGCSAGGLASILHCDEFRELFPRTTRVKCLSDAGLFLDTVDVSGRRSLRNLFGGVVTLQCFFPQRLIASVRTPLFLLNAAYDTWQIQASLAPPSADYRWNWNDCRKNYARCSRPQLKYLQGFRNQMLGVVRGFSRSHQNGLFINSCFAHCQAERQDTWFAHDSPHIGNRVLGQSFGLRRGISLVALHSSHAPVTMRLLSVWSLPSRGRVQQYEHNYMGRVLLSLLVIGFLTELEFRLLDVPTLVTKPATIWFSTDLMMFFSYIANEKQPLI 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1166 465 Pfam Pectinacetylesterase 51 369 IPR004963 GO:0016787
Lal19g1166 465 PANTHER PECTIN ACETYLESTERASE 2 51 365 - -
Lal19g1166 465 PANTHER NOTUM-RELATED 51 365 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1166 Lal-Chr19 15145456 15151324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1166 52 370 Carbohydrate Esterase AT1G57590 67.359 5.02e-169 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1166 K19882 - gmx:100791571 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1166 19 15145456 15151324 Lal19g1166 19 15145456 15151324 ECH
Lal19g1166 19 15145456 15151324 Lal13g0582 13 3798176 3802804 ECH
Lal19g1166 19 15145456 15151324 Lal5g0198 5 1710501 1717222 ECH