Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1165 ATGGAAACATTAGAACTAATTGATGCTCATCAAACTCAGTCATCTTCATCTTCATCTTCTTCCATTGATAGCACCAACCACCCTTCTAGGAAACCACCACCCTCTTCATCTTTGAGTTTCTCAAATGTCTTCAAAAATAAAGGCAACACCAAAAACATAACTGATTTGAGCACTGACCTTGGTCTTAGTATCTCTCATTCTTTTCAATCTGAATTACCATTCAATTCAACACCAAGGGAGCAAAGTTATGATTGGCCACCAATTAAATCCATATTGAGGAGCACCCTTGTTGAGAAACAAAACCAGCATAGACCCTCTTTATATGTAAAAGTCTACATGGAAGGCATTCCCATAGGCAGAAAATTGAATCTGCTATCACACCATAGCTATGATGGACTTGTAAGAGATCTTAGTCATATGTTTAGGACCAACATTCTGTACCCTCACTCTCAACCACTTAATTCTCAGAATTTTCATGTTCTAACTTATGAGGATCAAGAAGGGGATTGGATGATGGTTGGAGATGTGCCATGGGAGATGTTCTTGACTAATGTGAAGAGGCTAAGGATCATAAGAGTTGCCAGATGCTAG 591 0.3892 METLELIDAHQTQSSSSSSSSIDSTNHPSRKPPPSSSLSFSNVFKNKGNTKNITDLSTDLGLSISHSFQSELPFNSTPREQSYDWPPIKSILRSTLVEKQNQHRPSLYVKVYMEGIPIGRKLNLLSHHSYDGLVRDLSHMFRTNILYPHSQPLNSQNFHVLTYEDQEGDWMMVGDVPWEMFLTNVKRLRIIRVARC 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1165 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 17 196 - -
Lal19g1165 196 ProSiteProfiles PB1 domain profile. 106 195 IPR000270 GO:0005515
Lal19g1165 196 Gene3D - 100 196 - -
Lal19g1165 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 196 IPR003311 GO:0005634|GO:0006355
Lal19g1165 196 SUPERFAMILY CAD & PB1 domains 102 190 - -
Lal19g1165 196 MobiDBLite consensus disorder prediction 1 43 - -
Lal19g1165 196 Pfam AUX/IAA family 42 192 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1165 Lal-Chr19 15141168 15142744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1165 110 190 B3 DNA Binding Superfamily AT4G23980 37.037 1.43e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal19g1165 AUX_IAA 9.5e-32 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1165 K14484 - gmx:100818083 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1165 19 15141168 15142744 Lal19g1165 19 15141168 15142744 ECH
Lal14g1616 14 16594971 16596506 Lal19g1165 19 15141168 15142744 LSH
Lal7g1020 7 16377232 16378809 Lal19g1165 19 15141168 15142744 LSH