Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1153 ATGGAGGCTAAATTTGGGGGAAAGAATCAATTTTTAAATGGAGATATAGTGCAAGAGATGAAGGGTGTTGGTGTTGGGAATGAGAAGAAGGGTTTAGAGTGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCACTGCTATGTCACTCAACTCAGTTCCATCAGATTGTAGGAGTCACCAGTTTTTCCCACCTCATCCTGAAAATGCTGGTAATGCATCTTACAACAATTTGTCTTCTTCTATCAACTCAAGCAAGGGAAAAAGAGAATTGGAGAAAAGGACAAGAGAGGTTCTTATAGGAGAAGAAGGGAAAGAGTTTCTGAATGATGAAGGTGGTTCCCTTAATTTGAAACTTGGAGGTCAAGTTTATCCTATCATGGAGGAAAGTGAAGAAAGAAGTGGAAAGAAAACAAAGGTAATTATTGGAAGTATTTCCACTGCTACTACCTTTAACCGCGCTGTTTGTCAGGTTCAAGATTGTAAGGCTGATCTTAGTAATGCAAAGGATTACTACCGCCGCCACAAAGTTTGTGATTTGCATTCAAAGGCTACTAAGGCACTGGTGGGAAATGTTACGCAGCGTTTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGGAGTTGCCGTAGGCGTCTGGCAGGTCACAATAGGAGAAGGAGGAAAACACATCCCGATGCTACTGTAGTTAATGGCGGATCTCTGAATGATGAAAGGAGCAGTAGCTATCTGTTGATGAGTCTGATACAGATACTGTCCAATATGCATTCAAATGGCTCAGAACAAATAAAGGACCAGGATATTCTCTCACATATCTTGAAGAACCTGGCAAGTATGGCTGGTACAATTAATGGAAGAAGTTTAGCCTCCTTATTAGAAGGATCTCAAGGTTTGGTAAATGCTGAAACACCTGGAACTGCACATGATGTTCCAAACCTTAATTCTAATGGTCCACAAGCTTCCAAGCCTTCTGGTTCTTCCCTCAAGTTGGATGATAATGCTTTCATCCATCAGAACCCTCCAAAATCTATGGCACAGTGTGAGACAGTGCCTGCTTATAGTATGATGGAGAAGTGTATACCTTCAGTTAATGATGGACCAGGAAATTCTAAATCTCCATCTGAACCACAAACTTCAAATGTACTTGCATCAAGGGACAACCTTCCATCCCAATTAGTTTTATCAGAGACAGCAGCGGAAAAGAACGGCTTAAGTAACATTGACTTGAACAATGCATACAATGATATGCAGGACAGTATTGAGAATCCTAGGGAGTCTTGCCATCCTTCATGGTTGCAATGTGACTGTAGAAACTCAGATTCAACCTCTACTCAGTCACCTTCTAGTTCTAGTGGAGAAGCCCAGAGCCGCACAGATCGTATTGTTTTCAAACTCTTCGGCAAAGACCCAAATGAATTTCCTCCTCTTCTCCGATCGCAGATCTTCAACTGGTTATCCTGCAGTCCTACAGAGATTGAGAGCTATATACGGCCAGGATGTATCATATTAACAATTTATCTCCGTCTAGAAAAATCTGCATGGAAGGAGCTGTGCTGTAATCTCAGATCCAGCTTGAGAAAGTTTCTTGCTGCATCAGACGATTCTTTCTGGAGAACGGGATGGGTATATACAAGGGTGCAACACTCTGTAGCTTTTTTGTATAATGGTCAGGTTGTCTTAGATGTTCCCTTGAGTCTCAAAAGCCCACAAAATTGCAGGATTTTATGCATCAAACCACTTGCTGTTCCTTCAAGCACAAGTGCTCAATTTACTGTGAAAGGATTCAACCTTTTCCAGTCTAGCACAAGGTTGCTATGTGCACTTGAAGGGAAATATCTAGTAAATGATAGGTGCCATGATTTGATTGATGTGGCTGATGCAGCTACTCAGCATCTTAGCTTCTCATGTCATATACCAAATGTAATTGGAAGGGGGTTTATTGAGGTGGAAGATCATGGTCTTAGCAGCTGTTCCTTTCCATTCATAGTTGCTGAGGAAGATGTTTGTTCAGAGATATGCGAGGTGGAAAATGTGATTGAGGCAGCTGAGGCCACTAATGACATTCAGATGAAAAACAAACAAATGGAAGAAAAGACTCAGGCTTTGGATTTCTTACAAGAAATGGGTTGGATACTTCATAGAAGGAGTGTGAAGGTTAGGCTAGGTCCAAATGCACCTATGCAGGATCTCTTCCATTTCAACCGGTTCATGTGGCTTGTTGACTTCTCCATGGATCATGATTGGTGTGCTGTGATGAAAAAGCTCTTGGACATTGTCTTTGAAGGCGGTATTGATGCAGGAGAGCATAGTTCCATTGAGCTTGCGCTGTTAGACATGTGTCTTCTACACAAAGCTGTGAAGAGAAACTACAGGCCTATGGTGGAACTACTGTTAAAATTTGTGCCAGTTAAAGCCTCAGATATTGCAAACAGTAAAGAGAAGGTAGTTGATAGATTCTTATTTAAACCTGATGCTGTTGGACCTGCTGGATTAACTCCCCTTCATGTTGTGACAAGTATGAACGGATCGGAGAATGTGTTGGATGCATTAACTGATGATCCTGGACTGGTAGGAATCAAGGCATGGAAAAGTGCCAGGGACAATACAGGTTTTACACCAAACGACTATGCATGCTGCCGAGGCTATTACTCCTACATTCAACTTGTCCAAAGGAAAACAAGCAAGCAAAGTGAAAGACAACATGTGCTTCATATCCCTGGTACTGGTACCATTGAGGATAATAACACAAAGAGAAAGCAATTAGATGTGCATAGGACATCTAAAGTTTTTTCAAGTTTTGAGACTGAGAAGATTGGAACCACTAAAATGGCACAACAATGTGGGCTGTGCCAATACAAGGTTGCTTTATATGGAGGCATGAGAACAAGACTGGTTTATAGGCCTGCAATGCTGTCAATAGTAGCTATTGCAGCTGTGTGTGTATGTGTGGCTTTGCTCTTCAAAAGCTCACCTAAAGTTTATTATGTCTTCCAACCCTTCAAATGGGAATCATTGGATTATGGCTTTATCTAA 3057 0.4145 MEAKFGGKNQFLNGDIVQEMKGVGVGNEKKGLEWDLNDWKWDGDLFTAMSLNSVPSDCRSHQFFPPHPENAGNASYNNLSSSINSSKGKRELEKRTREVLIGEEGKEFLNDEGGSLNLKLGGQVYPIMEESEERSGKKTKVIIGSISTATTFNRAVCQVQDCKADLSNAKDYYRRHKVCDLHSKATKALVGNVTQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDATVVNGGSLNDERSSSYLLMSLIQILSNMHSNGSEQIKDQDILSHILKNLASMAGTINGRSLASLLEGSQGLVNAETPGTAHDVPNLNSNGPQASKPSGSSLKLDDNAFIHQNPPKSMAQCETVPAYSMMEKCIPSVNDGPGNSKSPSEPQTSNVLASRDNLPSQLVLSETAAEKNGLSNIDLNNAYNDMQDSIENPRESCHPSWLQCDCRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKDPNEFPPLLRSQIFNWLSCSPTEIESYIRPGCIILTIYLRLEKSAWKELCCNLRSSLRKFLAASDDSFWRTGWVYTRVQHSVAFLYNGQVVLDVPLSLKSPQNCRILCIKPLAVPSSTSAQFTVKGFNLFQSSTRLLCALEGKYLVNDRCHDLIDVADAATQHLSFSCHIPNVIGRGFIEVEDHGLSSCSFPFIVAEEDVCSEICEVENVIEAAEATNDIQMKNKQMEEKTQALDFLQEMGWILHRRSVKVRLGPNAPMQDLFHFNRFMWLVDFSMDHDWCAVMKKLLDIVFEGGIDAGEHSSIELALLDMCLLHKAVKRNYRPMVELLLKFVPVKASDIANSKEKVVDRFLFKPDAVGPAGLTPLHVVTSMNGSENVLDALTDDPGLVGIKAWKSARDNTGFTPNDYACCRGYYSYIQLVQRKTSKQSERQHVLHIPGTGTIEDNNTKRKQLDVHRTSKVFSSFETEKIGTTKMAQQCGLCQYKVALYGGMRTRLVYRPAMLSIVAIAAVCVCVALLFKSSPKVYYVFQPFKWESLDYGFI 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1153 1018 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 1016 IPR044817 GO:0003677
Lal19g1153 1018 MobiDBLite consensus disorder prediction 221 242 - -
Lal19g1153 1018 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 21 1016 - -
Lal19g1153 1018 MobiDBLite consensus disorder prediction 369 390 - -
Lal19g1153 1018 MobiDBLite consensus disorder prediction 308 350 - -
Lal19g1153 1018 Gene3D - 149 218 IPR036893 GO:0003677|GO:0005634
Lal19g1153 1018 SUPERFAMILY SBT domain 155 236 IPR036893 GO:0003677|GO:0005634
Lal19g1153 1018 SUPERFAMILY Ankyrin repeat 786 896 IPR036770 -
Lal19g1153 1018 ProSiteProfiles Zinc finger SBP-type profile. 154 231 IPR004333 GO:0003677
Lal19g1153 1018 Gene3D - 776 913 IPR036770 -
Lal19g1153 1018 Coils Coil 689 716 - -
Lal19g1153 1018 MobiDBLite consensus disorder prediction 373 390 - -
Lal19g1153 1018 Pfam SBP domain 157 230 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1153 Lal-Chr19 15057287 15066641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1153 29 1016 SBP-box Gene Family AT3G60030 43.953 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal19g1153 SBP 7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1153 - - gsj:114419913 1430.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1153 19 15057287 15066641 Lal19g1153 19 15057287 15066641 ECH
Lal19g1153 19 15057287 15066641 Lal17g1449 17 15888645 15896743 PCT
Lal19g1153 19 15057287 15066641 Lal4g1451 4 18665307 18675811 PCT
Lal17g1449 17 15888645 15896743 Lal19g1153 19 15057287 15066641 PCT
Lal4g1451 4 18665307 18675811 Lal19g1153 19 15057287 15066641 PCT