Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1149 ATGAACATTGTTCTGATTTTCAGGCAATTGGAGCACATTGTCCTTGTGCATTATCGAGAAATTAAAGAGGGATACAAATCCGGTATCTCACATTTGCTTGTAGTTCCAGAAACCTTGGCTGGTAGCTCTCGAAGTAGTTCAGCACCTTCCGACGTCAAAATAAATTCCCCTATATCTGTTGTTCAAACATCTTTCACATCAAGTGCATATAGAGTTGATCAGAATGGACGAACTTCCGAGTATGTGGATGTGGACTCAGAAAGTGGTCCTCGAGCCTCGTCCCATGCTCAATTTACCAGTAATTCAATAGCTCACAATGCACCTCTGCTTGCAAATGAAGCCATTGGATTTTCTGAGTTATCTGGGAACCCTTTAATTCATTTGTCATCTCTCCGGAGCTTTTATCCTGGTACTGGCTTGTCTCCATGGCCATTAGCTCAGAACTCTAGAAGAAACGCAACTAATGTGCATGATAGAGAACTTCTTGTTGAACAATCCATTGAAGGCACTGAGGATAAAAGGTTAGATTCAGATCACAGAATGCCTGATGATGGCATTCTTTTCAGTGATAGGCTCGTCGGTGGCACTTACGTCCAGCCAGTTGCAGAAATGTCACAGAATGTAAATCAGGTGCAAAAGGAGTGTGATTTAGATTCATTTCATACCCATTCTAATCATTCAGTTGTTGCAACTACTACAACCCTAATTGAGCAAAAACTCCAAGATGGCTGTACTCGTACAAACAATGACGAACCACAACATGTTGAATATTTGGAATTGAAGCAGCTTGGTAGTTTTGGAAGGTGGATGGATAACGATATTGGTGGAGACTGTAATAATTCCTTCATAGCTTCAGATTCTGCCAATTATTGGAATATGCTTGAGGCTCATAATGAGGATAAGGAGGTGTCTAGTTTATCCCAGATGCAGTTGGATATGGATTCATTAGGCCCTTCTCTTTCCCAAGAACAACTATTTAGCATCCATGACTTCTCTCCAGATTGGGCATACGCAGGGGTCAGAACAAAGGTTTTAATAGTTGGCACATTTTTGGGGAGTAAAAAGCTTTCTAATGAGATCAAGTGGGGATGTATGTTTGGTGAAATCGAAGTTTCTGCTGAAGTTTTGTCAGAGAATGTCATACGGTGTCATACTCCTTTACATTCACCTGGTCGTGTTCCCTTCTATGTTACCTGCAGTAATAGGTTAGCCTGCAGTGAGGTCAGGGAATTTAAATATTGTGAAAACCCAACCAACTTTGTAGGTCCTGTGGGTATTAAAATCACACCAGAAGAAGAATTACAACTTCAAATGCGATTACTTAAACTGATAGACCTGGGACCTGACAAGAAGTGGTTGAAGTGCTCTGTTGCTGAATGTGAAGGATGTAAACTTCAAGGAACATTGTATTCTATGAGAGATGATAGTGGAGTATCTCAAGAAACTTTCCAGATTGATGGAAGTGATCACATGAACCCTAGAGATGTATTGTTTCAGAGGTTAACGAGGGACAAGCTTTATGTGTGGTTGGTATTTAAGGTTCATGAAGGAGGAAAAGGACCACATGTGTTGGATAATGAAGGCCTAGGAGTAATACATTTGGCAGCTGCTCTTGGTTATGTGTGGGCTATGAGCCCGTTAGTTGCTGCTGGTATTAGTCCTAACTTTAGAGATACTCATGGAAGAACAGGACTTCACTGGGCCTCATATTTTGGGAGAGAGGAAACTGCGATTGCACTACTCAAATTAGGTGCAACCCCAAGTGCTCTTGAGGATCCAACGTCAGCATTACCTCAAGGACAAACAGCAGCTGATTTAGCTTCAAGTAGAGGACATAAAGGCATTGCTGGATATTTGGCTGAGGCAGATCTGACAAGTCAATTATCTACATTGACCGTCAATGAAAATGTGATAGACAATGTGGCGACAACCATAGCAGGTGACACTGATTTTGAGTCTGCTAGAGCTGACTCATCTTATATGACAATGGATGAGCAGCACCATCTAAAAGAATCACTTGCTGCTTTTCGAAAATCAGCTCTTGCAGCTGCTTCAATCCAAGCAGCCTTTAGAGCAAGATCATTCCGTCAAAGACAATTAGCCAAAAGTAGCAATGATACATCTGAAGCCACATTTGACATAGTTGCTGATTCTTCGGACAAGGTTCAGAAGATGACTCACTTTGAAGATTATTTACATTCTGCAGCTTTGAGTATTCAAAAAAGATACCGAGGATGGAAGAGAAGAAAAGATTTCTTGAAAATACGCAACCGCATTGTAAAAATTCAGGCTCATATTAGAGGACACCAAGTTCGTAAGCAGTACAAAAAAGTTGTCTGGTCTGTCAGCATTGTTGAAAAGGCGATTCTACGCTGGAGACGGAAAGGGGCTGGCCTGCGAGGATTCCGGGTTGAACAGCCAGTTGGCATTGTGGCTAAAGTTGGTGAGTATGAATTTCTAAGCATTGGGCGGAGGCAGAAATCAGATAATGTTAATAAAGCTCTAGATAGAGTCAAGTCCATGGTTCGTAACCCAGAGGCGCGTGATCAGTATATGAGGCTTGTCATGAAATATCAGAATCTTAAGATTGGTGAAGATGGAAGCAGTCAATCACAGCGTGTTGATTAG 2628 0.4159 MNIVLIFRQLEHIVLVHYREIKEGYKSGISHLLVVPETLAGSSRSSSAPSDVKINSPISVVQTSFTSSAYRVDQNGRTSEYVDVDSESGPRASSHAQFTSNSIAHNAPLLANEAIGFSELSGNPLIHLSSLRSFYPGTGLSPWPLAQNSRRNATNVHDRELLVEQSIEGTEDKRLDSDHRMPDDGILFSDRLVGGTYVQPVAEMSQNVNQVQKECDLDSFHTHSNHSVVATTTTLIEQKLQDGCTRTNNDEPQHVEYLELKQLGSFGRWMDNDIGGDCNNSFIASDSANYWNMLEAHNEDKEVSSLSQMQLDMDSLGPSLSQEQLFSIHDFSPDWAYAGVRTKVLIVGTFLGSKKLSNEIKWGCMFGEIEVSAEVLSENVIRCHTPLHSPGRVPFYVTCSNRLACSEVREFKYCENPTNFVGPVGIKITPEEELQLQMRLLKLIDLGPDKKWLKCSVAECEGCKLQGTLYSMRDDSGVSQETFQIDGSDHMNPRDVLFQRLTRDKLYVWLVFKVHEGGKGPHVLDNEGLGVIHLAAALGYVWAMSPLVAAGISPNFRDTHGRTGLHWASYFGREETAIALLKLGATPSALEDPTSALPQGQTAADLASSRGHKGIAGYLAEADLTSQLSTLTVNENVIDNVATTIAGDTDFESARADSSYMTMDEQHHLKESLAAFRKSALAAASIQAAFRARSFRQRQLAKSSNDTSEATFDIVADSSDKVQKMTHFEDYLHSAALSIQKRYRGWKRRKDFLKIRNRIVKIQAHIRGHQVRKQYKKVVWSVSIVEKAILRWRRKGAGLRGFRVEQPVGIVAKVGEYEFLSIGRRQKSDNVNKALDRVKSMVRNPEARDQYMRLVMKYQNLKIGEDGSSQSQRVD 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1149 875 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 9 853 - -
Lal19g1149 875 Gene3D - 730 779 - -
Lal19g1149 875 SUPERFAMILY Ankyrin repeat 511 622 IPR036770 -
Lal19g1149 875 SMART iq_5 754 776 IPR000048 GO:0005515
Lal19g1149 875 SMART iq_5 678 700 IPR000048 GO:0005515
Lal19g1149 875 SMART iq_5 731 753 IPR000048 GO:0005515
Lal19g1149 875 Gene3D Immunoglobulins 321 419 IPR013783 -
Lal19g1149 875 SUPERFAMILY E set domains 328 413 IPR014756 -
Lal19g1149 875 Pfam IQ calmodulin-binding motif 758 776 IPR000048 GO:0005515
Lal19g1149 875 Pfam IQ calmodulin-binding motif 733 752 IPR000048 GO:0005515
Lal19g1149 875 ProSiteProfiles IQ motif profile. 732 761 IPR000048 GO:0005515
Lal19g1149 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 726 782 IPR027417 -
Lal19g1149 875 SMART ANK_2a 560 589 IPR002110 GO:0005515
Lal19g1149 875 SMART ANK_2a 599 628 IPR002110 GO:0005515
Lal19g1149 875 Gene3D - 509 625 IPR036770 -
Lal19g1149 875 ProSiteProfiles Ankyrin repeat profile. 560 592 IPR002110 GO:0005515
Lal19g1149 875 CDD IPT 327 413 - -
Lal19g1149 875 ProSiteProfiles IQ motif profile. 755 783 IPR000048 GO:0005515
Lal19g1149 875 Pfam IPT/TIG domain 328 410 IPR002909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1149 Lal-Chr19 15024591 15032639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1149 260 871 CAMTA Transcription Factor Family AT5G09410 41.277 1.54e-154 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1149 K21596 - gmx:100818336 1238.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1149 19 15024591 15032639 Lal19g1149 19 15024591 15032639 ECH