Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1143 ATGGTAACTGGAGCGGAAATTATTTGTCAGCAAAACATTCCGAGCATGTTAGACGTAAAGTATCACCTTTGCGTGGCGCAAGAACACAACGTCAAGGTTGAGGTTTCACCCACCTCCCCTGCAGTCCAAATCTTTACCGAAGTTCTGGTTTCCTCTGAATCCTTTTCTACTGAAACTTCTTCCTTTGAATCGGCTGTGACTTCCACTGAGATTATTAAAGATTCTATCATGGAGACTCCTGCAACCATGTTTATCCCAAATGTTCGTTCTGGTAGCTATGCTGAAATTGGTCCAAGGGTATCTATGGAAGATGAACATATTCGGATTGACAATCTAGCTGCCCACCTTGGATTTGTGTTTCAGTGCCCGATACCAAGTGCATTTTATGCTGTTTTTGATGGACATGGAGGGCCGGATGCAGCTGCTTTTGTTAAGAGGAATGCTATGAAGTTATTTTTTGAAGATGCTAATATGCTGCAATCATATGATACTGATGCATTTTTTCTTAAAAAGTTGGAGGAATCTCATCAAAGAGCTTTTTTACGGGCAGACCATGCTTTGGCTGATGATCAAAGTGTTAATAGTTCATGTGGGACTACAGCATTGACTGCCCTTGTACTTGGAAGGCATTTGCTGGTTGCTAATGCTGGTGACTGCCGAGCAGTACTTTGCAGAAGAGGTACAGCTGTTGAGATGTCTCATGACCATAGGCCAAGCTATTTACCGGAACGGAGGAGAGTGGAGGAGTTAGGTGGCTTTGTTGATGATGGATACCTGAATGGTTATCTTTCAGTGACACGTGCGCTTGGGGATTGGGACTTGAAACTTCCACTTGGTGATACATCCCCTCTTATTGCTGATCCAGACCTTCAACTGGTTACGTTAACTGAGGAAGATGAGTTCATGATCATTGCTTGTGATGGGATTTGGGATGTTATGTCTAGCCAAGTTGCAGTTAGTCTTGTTCGTCGTGGATTAAGAAGGCATGATGACCCACAGCAATGTGCCAGAGAGCTTGTCAAGGAAGCATTGCGCTTGAACACATCAGATAATCTCACTGTGATTGTTATATGTCTGTCCACAGTTGAAAGCATAGTTGAAACTTGTCTGCCACAAAGACGAAGATTCAAAGCTTGCAGTCTTTCTGAAGAAACCCGTAATAGATTGAAGAGCTTGATAGAGGGTAATTAA 1191 0.4299 MVTGAEIICQQNIPSMLDVKYHLCVAQEHNVKVEVSPTSPAVQIFTEVLVSSESFSTETSSFESAVTSTEIIKDSIMETPATMFIPNVRSGSYAEIGPRVSMEDEHIRIDNLAAHLGFVFQCPIPSAFYAVFDGHGGPDAAAFVKRNAMKLFFEDANMLQSYDTDAFFLKKLEESHQRAFLRADHALADDQSVNSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGTAVEMSHDHRPSYLPERRRVEELGGFVDDGYLNGYLSVTRALGDWDLKLPLGDTSPLIADPDLQLVTLTEEDEFMIIACDGIWDVMSSQVAVSLVRRGLRRHDDPQQCARELVKEALRLNTSDNLTVIVICLSTVESIVETCLPQRRRFKACSLSEETRNRLKSLIEGN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1143 396 ProSitePatterns PPM-type phosphatase domain signature. 128 136 IPR000222 GO:0043169
Lal19g1143 396 Pfam Protein phosphatase 2C 98 351 IPR001932 -
Lal19g1143 396 CDD PP2Cc 88 359 IPR001932 -
Lal19g1143 396 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 1 383 - -
Lal19g1143 396 SMART PP2C_SIG_2 104 359 IPR001932 -
Lal19g1143 396 Gene3D - 66 364 IPR036457 -
Lal19g1143 396 ProSiteProfiles PPM-type phosphatase domain profile. 89 359 IPR001932 -
Lal19g1143 396 PANTHER PROTEIN PHOSPHATASE 2C 1 383 IPR015655 GO:0004722|GO:0006470
Lal19g1143 396 SUPERFAMILY PP2C-like 82 360 IPR036457 -
Lal19g1143 396 SMART PP2C_4 79 357 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1143 Lal-Chr19 14948407 14950797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1143 1 395 PP2C-type Phosphatase Gene Family AT1G48040 55.528 5.44e-144 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1143 K14803 - gmx:100775577 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1143 19 14948407 14950797 Lal19g1143 19 14948407 14950797 ECH
Lal14g1598 14 16466532 16468996 Lal19g1143 19 14948407 14950797 LSH