Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1142 ATGGTTGTAAAGGGAAGAGACATTAACAACAACAACATCAGAAGCGAGGAAGAGATGATGGACCTTAAAAGAGGTCCTTGGACCGTTGATGAGGACCTCTCCCTCATCAATTACATTGCCAATCATGGCGAAGGTCGCTGGAATTCCCTAGCATGTTCTGCTGGCCTCAAACGAACGGGGAAGAGTTGCAGATTAAGGTGGCTGAACTATCTTCGTCCTGATGTTCGACGTGGACACATCACACTTCAAGAACAACTTTTGATTCTTCAACTTCATAATCAATGGGGAAACAGGTGGTCTAAAATTGCTCAATATTTGCCCGGAAGAACCGATAATGAGATAAAAAATTATTGGAGAACTCGGATCCAAAAACATGCGAAGCACCTCAAATGTGACGTTAATAGCAAGCAATTCAAGGACACCATGCGCTACCATTGGATGCCAAGGCTGGTGGAGCGCATTCAATCCGCAGCAGCCACCACCACCACCATGCCAACCACCGTCAACAAGAGTTCTCCAACATTATCCACCACCACAAATAACGCATACACCTACAGCAACAACCTCAGTAGCAATTTTGAGGTTGGGAATAGTAGCAGTGCAGCATCATCAGACACGTTTGGGACTCATGAGGTTTCACCAATCTCAGATTTGAGTACTGATTATTACAATGACCCAATTAGTGGTAATAACCATAACCCTCAAGATTACTACCAACCTTCACAAGTAAACTATGATTGCATCACAAGCCCATTTGGATTGTTCGATTATCAAGCCATGGAGCCAAACACACCATGGATTCAAAGTGAGGACACACCTAACAATTTTTGGAATGTTGACAACATCATTTTTTACAGCAGCAACTCATGA 870 0.4345 MVVKGRDINNNNIRSEEEMMDLKRGPWTVDEDLSLINYIANHGEGRWNSLACSAGLKRTGKSCRLRWLNYLRPDVRRGHITLQEQLLILQLHNQWGNRWSKIAQYLPGRTDNEIKNYWRTRIQKHAKHLKCDVNSKQFKDTMRYHWMPRLVERIQSAAATTTTMPTTVNKSSPTLSTTTNNAYTYSNNLSSNFEVGNSSSAASSDTFGTHEVSPISDLSTDYYNDPISGNNHNPQDYYQPSQVNYDCITSPFGLFDYQAMEPNTPWIQSEDTPNNFWNVDNIIFYSSNS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1142 289 CDD SANT 92 120 IPR001005 -
Lal19g1142 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 71 IPR017930 -
Lal19g1142 289 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Lal19g1142 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Lal19g1142 289 SMART sant 23 73 IPR001005 -
Lal19g1142 289 SMART sant 76 124 IPR001005 -
Lal19g1142 289 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Lal19g1142 289 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 7 192 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lal19g1142 289 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 179 285 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lal19g1142 289 Gene3D - 81 123 - -
Lal19g1142 289 Gene3D - 21 77 - -
Lal19g1142 289 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Lal19g1142 289 CDD SANT 26 71 IPR001005 -
Lal19g1142 289 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Lal19g1142 289 Pfam Myb-like DNA-binding domain 78 120 IPR001005 -
Lal19g1142 289 PANTHER MYB TRANSCRIPTION FACTOR 179 285 - -
Lal19g1142 289 PANTHER MYB TRANSCRIPTION FACTOR 7 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1142 Lal-Chr19 14939554 14941497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1142 1 260 MYB Transcription Factor Family AT3G06490 56.475 8.68e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal19g1142 Myb_DNA-binding 7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1142 K09422 - gmx:100805341 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1142 19 14939554 14941497 Lal19g1142 19 14939554 14941497 ECH