Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1132 ATGCTTCAGCAATTGATGAATCTGCTCTCTCTGTGCTGTAAGCCATTTGGGCACGCTGCTACTGAAATTGGAGTTACTGGTAGCAGTTTAAGTGGCGGCGGCGCTGATGGTGGTGGTGGAAGAGAAGGTAAAGACGGCTTGCTATGGTTCCGCGATGTCGGAAAATATGGCTCCGGTGATTTCTCTATGGCGGTGGTTCAGGCCAATCAAGTTCTAGAAGACCAGAGCCAGATCGAGTCTGGTCCTCTCGGAACCTTCGTCGGAATTTACGACGGTCACGGCGGACCCGACGCTGCAAGATACACATGCGATCACTTGTTTCGCCATTTCAAAGCAATATCGGCTGAATCACGTGGGGTTGTTACAGCTGAGACTATCGAAAGGGCTTTCCGCCAAACAGAAGATGGGTACAGTGCTCTCGTATCAGATTTATGGAGTACTCGGCCTCAGATTGCAAATGCTGGGTCCTGTTGTCTAGTTGGAGTGATATTTCAGCAAACACTCTTCGTGGCAAACCTTGGAGATTCTCGTGTTGTGTTGGGTAAAAAAGTTGGCAACACTGGAGGTATGGCTGCAATTCAGCTGTCTACCGAACACAATGCAAATCTCGAGGATATTAGAAATGAACTTAAAGGATTACACCCTAATGATCCCCAAGTCGTTGTCCTCAAGCATGGAGTGTGGAGGGTAAAGGGCATTATTCAGGTTTCTAGATCTATAGGTGACGTATATATGAAAAAAGCACAGTTTAATCGTGAACCTCTTAATGCCAAATTCAGGCTTCCTGAACCAATGAACATGCCTTACATGACTGCTAATCCGACTATTTTTTCTCATCCTCTCCAACGAAATGATTCTTTCCTTATATTTGCATCCGATGGTTTATGGGAGCACCTGAGTAATGAAAAGGCAGTGGATATTGTCAACAGCAATCCACACGCGGGTAGTGCGAAGAAACTCGTGAAGGCTGCCCTTCATGAAGCAGCAAGAAAACGAGAAATGCGATATTCTGACCTTCATAAGATTGACAAGAAGGTTCGGCGCCATTTTCATGATGATATATCTGTTATTGTTTTATTCTTAAACCACAACCTTATATCCAGAGGCACAGTGGTAGACCCACCACTCTCAATTCGAAGTGCTCTCAATCACTGA 1155 0.4545 MLQQLMNLLSLCCKPFGHAATEIGVTGSSLSGGGADGGGGREGKDGLLWFRDVGKYGSGDFSMAVVQANQVLEDQSQIESGPLGTFVGIYDGHGGPDAARYTCDHLFRHFKAISAESRGVVTAETIERAFRQTEDGYSALVSDLWSTRPQIANAGSCCLVGVIFQQTLFVANLGDSRVVLGKKVGNTGGMAAIQLSTEHNANLEDIRNELKGLHPNDPQVVVLKHGVWRVKGIIQVSRSIGDVYMKKAQFNREPLNAKFRLPEPMNMPYMTANPTIFSHPLQRNDSFLIFASDGLWEHLSNEKAVDIVNSNPHAGSAKKLVKAALHEAARKREMRYSDLHKIDKKVRRHFHDDISVIVLFLNHNLISRGTVVDPPLSIRSALNH 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1132 384 Pfam Protein phosphatase 2C 84 331 IPR001932 -
Lal19g1132 384 CDD PP2Cc 61 361 IPR001932 -
Lal19g1132 384 Gene3D - 52 369 IPR036457 -
Lal19g1132 384 ProSiteProfiles PPM-type phosphatase domain profile. 60 361 IPR001932 -
Lal19g1132 384 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169
Lal19g1132 384 PANTHER ALPHABET, ISOFORM E-RELATED 3 384 - -
Lal19g1132 384 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 384 - -
Lal19g1132 384 SMART PP2C_4 47 359 IPR001932 -
Lal19g1132 384 SUPERFAMILY PP2C-like 70 362 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1132 Lal-Chr19 14872676 14876840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1132 1 318 PP2C-type Phosphatase Gene Family AT3G17090 70.126 4.40e-157 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1132 K01102 - gmx:100811922 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1132 19 14872676 14876840 Lal19g1132 19 14872676 14876840 ECH
Lal7g0978 7 16063402 16067710 Lal19g1132 19 14872676 14876840 LSH
Lal19g1132 19 14872676 14876840 Lal5g1653 5 18827837 18833377 PCT
Lal19g1132 19 14872676 14876840 Lal11g0278 11 1967881 1971086 PCT
Lal5g1653 5 18827837 18833377 Lal19g1132 19 14872676 14876840 PCT
Lal11g0278 11 1967881 1971086 Lal19g1132 19 14872676 14876840 PCT