Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1126 ATGATGATGACAAATAACTTAGCGGGACAGTTAATGGGTTCAGAGTTGCATGGATTCCACACAATGCAAGAGCTGGATGTGGGAAGCATTATGGAGGAAGCAAGAACGAGATGGCTTCGTCCTAATGAGATTCATGCCATACTTTGCAATCACAAGTATTTTACCATCCATGTCAAGCCAGTGAATTTGCTTAAAAGTGGTACTATTGTATTATTTGACCGCAAGAAGCTTAGGAACTTTCGAAAAGATGGGCATAACTGGAAAAAGAAAAAAGATGGGAAAACTATTAAAGAAGCTCATGAGCACTTAAAGGTTGGTAATGAAGAAAGGATCCACGTATATTATGCACATGGCCAAGATAACCCAGGCTTTGTTCGTAGATGTTATTGGCTGCTTGATAAGAGTGTGGAACACATAGTCCTTGTTCATTACCGTGAAACACAGGAGGTGCAAGGTTCTCCTGTCACTCCTGTGAATTCAAACTCTAGCTCTTCTGATCCAGTCGCACCATGGATTAAATCAGAAGAAATAGATTCAGGGACCAACACTTCATATGCTAGTGAGATTAATCACAGTTCAGCAGTCAAAAGTCATGAACTGAGGCTTCACGAGATAAATACACTTGAATGGGATGACCTAGTGCTTGCAAATGATCTTAACACCTCTACTGTGCCTAATGAAGGCAAAGTTCAAAATTTTGATCAACAAAATCAAACTTTACTGAATAACAGTTTCAACAATGTAGCTAGCAATCGATCTGCAGAAGTTCCTTCTTTGGATAATTTAACTCAGCCAATTGCTGGGAGCAATAGTGTTCCTAACAATTTTTCAGAAAGTGTTAATATTCAGACGATGGACAATCAAGTAAATCCAAATGAGCACAGGAATGATCCTGTCTCCGCAAGTGGTGTGGGTTCCTTTAACAATTTTGTCAATGACAAATTGCAAAGTCAGGATAGCTTTGGGATGTGGGTGAACATCATGTCTGATTCACCGTGTTCAGCAGATGACTCAGCTCTTGAATCCTCAATTTCATCTGTTCACGATTCTTATTCATCCCTGGTAGTCAATAATCATCTATCTTCTCTGCCCGAACATGTATTTAATCTCACTGATGTGTCCCCGGCTTGGGTGTCTTCCACTGAGAAATCAAAGGTCCTGCTGACAGGATTCTTTCATAAGGACTATCAGCACCTTTCAATGTCCAATCTAATGTGTGTTTGTGGTGATGCAAGTGTTCCTGCAGAAATTGTTCAAGTTGGGGTTTACCGATGCTGGGTATCACCACATTCTCCTGGATTTGTGAATCTCTACTTGAGCTTTGATGGCCATAAGCCGATTAGCCAAGTTGTTAATTTCGAGTATCGTACTACTGTTTTGCATGATCCTGCTGTTTCTATGGAACAGAAGGACAACTGGGACGAGTTCCAACTTCAAATGAAGCTTGCTCATTTGCTCTTTGCTAAACAAAAGATCCTTGATGTTTTCTCTAGTAACGTATCACCTAATGCACTAAAGGAGGCCAGACAATTTACCTTCAAAACGTCATACATTTCCAATAGTTGGCAGTACTTGATGAAGTCAACTAAAGACAACAAAATTCCATTTTCACAAGCAAAAGATGCCCTATTTGGGATTGCATTGAAAAACAGACTAAAGGACTGGCTGTTGGAAAGGATTGTTTTAGGCTGTAAGACTACCGAGTTTGATGCGCAAGGCCAAAGTGTAATCCATTTGTGTGCTATTTTGGAGTATACTTGGGCTGTTTCCTTATTTTCATGGGCAGGTTTGTCGTTGGATTTCCGGGATAAATTTGGATGGACAGCTCTTCACTGGGCGGCGTATTACGGAAGGGAGAAAATGGTTGCAACTCTGTTGTCTGCTGGGGCAAAGCCAAATTTGGTCACGGATCCAACTCCACAAAATCCCGGTGGATGTACTGCTGCAGATATAGCTTATATGAAGGGTTATGATGGCTTAGCAGCATATCTTTCAGAGAAGTCTCTAGTTGAGCAGTTCAATGACATGAGTGTAGCTGGGAATATTAGAGGCTCACTGGAAACTAGCACGACTGAATCAGTAGGTTATGAGAACCTTGCTGAGGACCAGCCGTACCTGAAGGATACATTAGCAGCTTACCGAACGGCTGCTGAGGCAGCAGCACACATACAGGCTGCATTTAGGGAGCACTCCCTAAAATTGCAAACGGAGGCAGTTGGACTTTGCAGTCCAGAGGGTGAAGCACGCACAATAGTTGCTGCAATGAAGATTCAGCACGCCTTTCGTAACTTTGAGACAAGGAAAATTATGGCAGCTGCTGCTCGCATTCAGCATACATACCGTACGTGGAAGACTCGTAAGGAATTTCTCAACATGCGTCGTCAGGCTATCAAAATCCAAGCTGCTTTCCGGTGCTTTAAATTGCGGAAGCATTATCGTAAAATTCTTTGGTCTGTTGGCGTGGTTGAGAAAGCAGTGCTTCGCTGGCGTTTAAAGAGAAGAGGCTTCCGTGGTCTCCAGGTTAATCCTGTGGAAGCAACTGGAGATCAGAAGCAGGAAAGTGATTTTGAGGAGGACTTCTTCCGGACTGGTAGGAAACAAGCTTCAGAACGTGTTGAGAGATGTGTAGTACGTGTGCAAGCCATGTTCCGTTCTAAGAAAGCACAAGAAGAGTATAGGAGGATGAAGTTGGCCCTTAAACAAGCAAAGCTGGAACGGGAATATGAAGAACTTCTCAATACTGAAGTTGAGATGCAATGCAAGTGA 2766 0.4244 MMMTNNLAGQLMGSELHGFHTMQELDVGSIMEEARTRWLRPNEIHAILCNHKYFTIHVKPVNLLKSGTIVLFDRKKLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGQDNPGFVRRCYWLLDKSVEHIVLVHYRETQEVQGSPVTPVNSNSSSSDPVAPWIKSEEIDSGTNTSYASEINHSSAVKSHELRLHEINTLEWDDLVLANDLNTSTVPNEGKVQNFDQQNQTLLNNSFNNVASNRSAEVPSLDNLTQPIAGSNSVPNNFSESVNIQTMDNQVNPNEHRNDPVSASGVGSFNNFVNDKLQSQDSFGMWVNIMSDSPCSADDSALESSISSVHDSYSSLVVNNHLSSLPEHVFNLTDVSPAWVSSTEKSKVLLTGFFHKDYQHLSMSNLMCVCGDASVPAEIVQVGVYRCWVSPHSPGFVNLYLSFDGHKPISQVVNFEYRTTVLHDPAVSMEQKDNWDEFQLQMKLAHLLFAKQKILDVFSSNVSPNALKEARQFTFKTSYISNSWQYLMKSTKDNKIPFSQAKDALFGIALKNRLKDWLLERIVLGCKTTEFDAQGQSVIHLCAILEYTWAVSLFSWAGLSLDFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTPQNPGGCTAADIAYMKGYDGLAAYLSEKSLVEQFNDMSVAGNIRGSLETSTTESVGYENLAEDQPYLKDTLAAYRTAAEAAAHIQAAFREHSLKLQTEAVGLCSPEGEARTIVAAMKIQHAFRNFETRKIMAAAARIQHTYRTWKTRKEFLNMRRQAIKIQAAFRCFKLRKHYRKILWSVGVVEKAVLRWRLKRRGFRGLQVNPVEATGDQKQESDFEEDFFRTGRKQASERVERCVVRVQAMFRSKKAQEEYRRMKLALKQAKLEREYEELLNTEVEMQCK 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1126 921 Gene3D - 767 816 - -
Lal19g1126 921 SMART iq_5 791 813 IPR000048 GO:0005515
Lal19g1126 921 SMART iq_5 768 790 IPR000048 GO:0005515
Lal19g1126 921 SMART iq_5 871 893 IPR000048 GO:0005515
Lal19g1126 921 SUPERFAMILY E set domains 369 456 IPR014756 -
Lal19g1126 921 Pfam Ankyrin repeats (3 copies) 556 634 IPR002110 GO:0005515
Lal19g1126 921 ProSiteProfiles IQ motif profile. 792 816 IPR000048 GO:0005515
Lal19g1126 921 ProSiteProfiles IQ motif profile. 769 798 IPR000048 GO:0005515
Lal19g1126 921 ProSiteProfiles CG-1 DNA-binding domain profile. 27 153 IPR005559 GO:0003677
Lal19g1126 921 Gene3D Immunoglobulins 364 459 IPR013783 -
Lal19g1126 921 Coils Coil 885 921 - -
Lal19g1126 921 SMART ANK_2a 605 634 IPR002110 GO:0005515
Lal19g1126 921 SMART ANK_2a 644 675 IPR002110 GO:0005515
Lal19g1126 921 ProSiteProfiles IQ motif profile. 873 901 IPR000048 GO:0005515
Lal19g1126 921 SMART CG_1_2 30 148 IPR005559 GO:0003677
Lal19g1126 921 Pfam IQ calmodulin-binding motif 794 813 IPR000048 GO:0005515
Lal19g1126 921 SUPERFAMILY Ankyrin repeat 547 667 IPR036770 -
Lal19g1126 921 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 16 921 - -
Lal19g1126 921 Pfam CG-1 domain 33 146 IPR005559 GO:0003677
Lal19g1126 921 ProSiteProfiles Ankyrin repeat region circular profile. 605 633 - -
Lal19g1126 921 Gene3D - 535 674 IPR036770 -
Lal19g1126 921 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
Lal19g1126 921 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 921 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1126 Lal-Chr19 14836961 14846005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1126 30 905 CAMTA Transcription Factor Family AT3G16940 54.205 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lal19g1126 CG-1 2.3e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1126 K21596 - gmx:100793970 1479.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1126 19 14836961 14846005 Lal19g1126 19 14836961 14846005 ECH