Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1123 ATGATCATAATGGACTTAGATCACAGTATCAAAGGATCAGAAGCTGTTACTGAACAGAAGAAAACATGCGCTGATTGCGGTACTTCCAAAACTCCTCTCTGGAGAGGTGGACCTGCTGGTCCTAAGTCACTGTGCAATGCTTGCGGGATCAGAAGCAGAAAGAGGAAAAGAGCGATTCTAGGTTTAAGTAAGAGCAGCAATGATGCGATTAGGAAGGGGAAAAGGAGTAATAATAAGATTGGGGAAAGTTTGAAACAGAGGTTGTGGAATTTAGGGAAACAAGTTATGATGCAGAGATCTACTATGATGAAGAAATTTGGTGAAGAGGAACAAGCTGCTGTTGTTTTAATGTGTCTTTCTTATGGATCTGTTTATGCTTGA 381 0.4068 MIIMDLDHSIKGSEAVTEQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKRKRAILGLSKSSNDAIRKGKRSNNKIGESLKQRLWNLGKQVMMQRSTMMKKFGEEEQAAVVLMCLSYGSVYA 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1123 126 ProSitePatterns GATA-type zinc finger domain. 23 48 IPR000679 GO:0006355|GO:0043565
Lal19g1123 126 ProSiteProfiles GATA-type zinc finger domain profile. 17 53 IPR000679 GO:0006355|GO:0043565
Lal19g1123 126 PANTHER OS01G0976800 PROTEIN 11 126 - -
Lal19g1123 126 SMART GATA_3 17 67 IPR000679 GO:0006355|GO:0043565
Lal19g1123 126 Pfam GATA zinc finger 23 56 IPR000679 GO:0006355|GO:0043565
Lal19g1123 126 CDD ZnF_GATA 22 75 IPR000679 GO:0006355|GO:0043565
Lal19g1123 126 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 19 58 - -
Lal19g1123 126 Gene3D - 17 110 IPR013088 GO:0006355|GO:0008270
Lal19g1123 126 PANTHER OS01G0976800 PROTEIN 11 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1123 Lal-Chr19 14817219 14818171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1123 13 126 C2C2-Gata Transcription Factor Family AT3G06740 63.025 1.69e-46 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal19g1123 GATA 2.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1123 - - aprc:113847917 167.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1123 19 14817219 14818171 Lal19g1123 19 14817219 14818171 ECH
Lal19g1123 19 14817219 14818171 Lal5g0167 5 1463296 1469791 ECH
Lal7g0965 7 15963220 15964251 Lal19g1123 19 14817219 14818171 LSH