Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1122 ATGAATCTTAGCAACGGAAAACGGTCAAGTTCCGCCGTCGACGACAATTTTCCGGCGGGTCTTCGGGTTATGGTGGTGGATGATGATCACACGTGTCTAATGATCGTTGAGAAAATGCTACGTACTTGTCTCTATCAAGTTACTAAGTGCAACAGAGCAGAGATTGCACTCACACTTCTAAGGGAGAATAGGAATGGTTTTGACATTGTTATTAGCGATGTTCATATGCCAGATATGGATGGATTTAAGCTTTTAGAGCAAATTGGGTTGGAAATGGACCTTCCTGTTATCATGATGTCCGCGGATGATAGTAAAAATGTTGTTATGAAGGGTGTAACACATGGTGCCTGTGATTACCTCATTAAACCTGTTCACATACATTCTCTGAAGAATGTGTGGCAACATGTCATTCGGAAGAAAACGAATGAGTGGAGAGACAATGAGCAATCCGGTAGTGCTGAAGAAGGAGATCAACAGAAGAAGCCATCTGAAGATGCCGATTACTCATCTGCTGCGAATGAAGGTAGTTGGAGAAGTTCGAAGAAAAAGAGGGATGAGGATGAAGATGCAGACGAGAGAGATGACACATCCGCGTTAAAGAAGCCTCGGGTGGTTTGGTCTGTTGATCTCCATCAACAGTTTGTGGCTGCTGTGGATCAATTGGGAGTTGACAAGGCTGTTCCAAAAAAAATTCTGGAATTGATGAATGTTCCTGGACTCACTAGAGAAAATGTAGCCAGCCATCTCCAGAAATACCGTCTGTATCTTCGAAGGGTTAGTGGAGTTTCTCAGCATCCGAACAACTCCTTCCTCAACCAACAAGATGCAACTTTCGGGTCATTATCTTCAATTACTGATATTCAAACTCTAGCTGCTTCTGGAAAGCTCCCTGCACAAAGTCTAGCCACACTTCAAGCAGCAGGACTTGGTAGATCAACTGCAAAAGCGGGCATACCAATGCCTCCCATGGATCAAAGAAACCTTTTCAACTTTGAAAACCCAAGGTTAAGAATTGGAGAAGGGCAACAACAGCATTTGAGCAGTAGTAAATCAATAGACTTACTTCATGGAATCCCTACCAACATGGAGCCAAAGCAGCTTCCCAATTTGCAACAATCAACCCAATCTATTGGCAACTTGAATATGGGAATCAACCCCTTATTGATGCAGATGACACAATCACAACCTGGAGGCCAGATGCTACATGAAAATACTGGTCTTTATCCCAGAGTATCATCATCTTTAGGGCAGCCTAATAGGAATGGAATTTTTCATGGCCCTATTAGTACAAACGGTACTGCTACTAGCAACAGAGTACCTGCACAAAAGTCTCCAATGTTGGCTTTTCCTATGAATCAAACCCATGAAATGTCTGTCACTAGTTTCCCTCTTGGAAGCACTCCAGGTATATATAGTGTCACAGCAGAAGGCTCCTTTCAAGAAGAAGTTACTTCCGGAATCAGAGGAGACGGTGGATTTCTTCCAAGTTATGATATTTTTAATGAGCTGCACCATTACAAGACCAATGAGTGGGAAATAACAAGCCCTGGCCTCACTTATACTGCCTCTCAACCTTCAAATCCATTACAAGCTAACATCCATGCTTCATCGTCAATTTTAGTTCAACACGGATTCTATCCTACACAACAGACTGGACAAAGTGGAGATTCCCCTTTGTTCGACAAAGCCTTCTTTCTAGGAGAAGGCTTGGAACAAGGTAATCTCCACAATGCCGATCGACACCTTAACAAGCTTGCTGATGATTCGAAGAGGGTTAAGGTTGAAAGAGTTCCCGGTGAAAGCTCTCAGACTAATCTCTTCCTGGAGAATTATGGGCAGGAGGATCTTCTTAGTGCACTTCTGAAACAGCAAGAAGGGATTGAACCAGTAGAGAATGAGTATGATTTTGATGGATATTCTCTGGACAACATTCCTGTCTAA 1941 0.4292 MNLSNGKRSSSAVDDNFPAGLRVMVVDDDHTCLMIVEKMLRTCLYQVTKCNRAEIALTLLRENRNGFDIVISDVHMPDMDGFKLLEQIGLEMDLPVIMMSADDSKNVVMKGVTHGACDYLIKPVHIHSLKNVWQHVIRKKTNEWRDNEQSGSAEEGDQQKKPSEDADYSSAANEGSWRSSKKKRDEDEDADERDDTSALKKPRVVWSVDLHQQFVAAVDQLGVDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGVSQHPNNSFLNQQDATFGSLSSITDIQTLAASGKLPAQSLATLQAAGLGRSTAKAGIPMPPMDQRNLFNFENPRLRIGEGQQQHLSSSKSIDLLHGIPTNMEPKQLPNLQQSTQSIGNLNMGINPLLMQMTQSQPGGQMLHENTGLYPRVSSSLGQPNRNGIFHGPISTNGTATSNRVPAQKSPMLAFPMNQTHEMSVTSFPLGSTPGIYSVTAEGSFQEEVTSGIRGDGGFLPSYDIFNELHHYKTNEWEITSPGLTYTASQPSNPLQANIHASSSILVQHGFYPTQQTGQSGDSPLFDKAFFLGEGLEQGNLHNADRHLNKLADDSKRVKVERVPGESSQTNLFLENYGQEDLLSALLKQQEGIEPVENEYDFDGYSLDNIPV 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1122 646 CDD REC_typeB_ARR-like 23 137 - -
Lal19g1122 646 SUPERFAMILY CheY-like 20 143 IPR011006 -
Lal19g1122 646 SUPERFAMILY Homeodomain-like 199 258 IPR009057 -
Lal19g1122 646 PIRSF RR_ARR_type-B 2 638 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lal19g1122 646 MobiDBLite consensus disorder prediction 143 164 - -
Lal19g1122 646 Gene3D - 198 260 - -
Lal19g1122 646 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 616 - -
Lal19g1122 646 SMART REC_2 21 133 IPR001789 GO:0000160
Lal19g1122 646 MobiDBLite consensus disorder prediction 177 197 - -
Lal19g1122 646 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 257 IPR017930 -
Lal19g1122 646 Pfam Myb-like DNA-binding domain 203 253 IPR001005 -
Lal19g1122 646 Gene3D - 21 160 - -
Lal19g1122 646 Pfam Response regulator receiver domain 23 131 IPR001789 GO:0000160
Lal19g1122 646 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Lal19g1122 646 MobiDBLite consensus disorder prediction 143 197 - -
Lal19g1122 646 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 616 IPR045279 GO:0009736
Lal19g1122 646 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 201 254 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1122 Lal-Chr19 14808109 14811127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1122 55 646 Response Regulator Gene Family AT3G16857 47.706 7.31e-160 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lal19g1122 Response_reg 9.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1122 - K14491 lang:109356888 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1122 19 14808109 14811127 Lal19g1122 19 14808109 14811127 ECH
Lal14g1567 14 16283864 16288058 Lal19g1122 19 14808109 14811127 LSH