Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1117 ATGGGTTCCACAACTGATATCAGAGGAGTTTTAACCGCTTTTAGTCCTTCTCTCGATTTCTTTGCAATCACCACTGGAGATGGCCGCGTCAAGATATGGGATACACTCAAGGGTCAGCTCCAAACTGAATTTTCAGATATTACTTCAACTGATACTTCAACTAATACTTATCATTCATCCCTGAAAGGCCATCTCTCAATTGATTATACTTGCATTAAGTGGCTCTCTTTTGAAACAAAGAAGAAAAGGAAGCATGCTTCGTCGTTGTTAGTGCTTGGAACTGGTAGTGGTGATGTTTTAGCAATCAATGTCTCTGCTGGTCAATTGACTTGGAGAATTAGTGATTGTCATCCTGGAGGCGTGAGAGCCATCTCGTCTTCGGCAAATGGATCATGCATATATACCGCAGGTGCAGATGGGATGATATGTGTGATAAATGGCTTGACCGGAAATCTGTTGGAGAAATTTAAGGCTTCTACAAAGGCAGTATCCTCTATGTCTGTTTCTTCAGATGGGAGGATCTTAGCTACTGCAGCATCACAACTGAAGGTTTTCAACTGTTCTAATCACAAAAAGATTCAAAAATTCTCTGGTCATCCTGGATCTGTTCGGTGCATGGTCTTTACTGAAGATGACAAGTATATACTCTCATCTGGTGTCGGTGAAAGATATGTTGCTGTGTGGAGGATAAATGACCCCAAAAAGCAGTCAGCTAACTGTGTTCTTTCAATGGAGAACCCTGCTGTCTTTCTTGATAGCAGGTGCATTGATAATGGGGATGGTGAGACTACCGTGTGTGTTTTGGCAATCTCAGAAGTTGGTGTTTGTTATCTCTGGTTCGGAAATAGCATTGAAGAATTACGTAATGCAAAGCCCACAAAAATATCATTATCTTTAGAAGAAATGTCCTCCAGCAACTACAAGGGAGCTTTATCAGCAATATATGCTGCAAAATTACAAGGCATCCAGAAACTTTCCTCCGGAAATGTTTTTCTTGTTTATGGGTTACTCGCAAAACCATCCTTTCGAAAAATTCTAGTGCATTCTGGTACAGACATAAAGTTGAATTTCTCCCGTGATGTTACTGCATTAGACCGTGCTAATGCAGAAGATGCCTTGCTTCCAACTCCCAAGGTTTTTGATTCACATGACAAAGAGGAAACATTTGAAGACTTTTTGGACAAGGATGCAACCAATGATTTAGTTAGTAGTAAAGCTGACTCTTTTCAGATAGAAGATGATATGGTTGAAGGTGAAACTGATGTAATTTGCATGGAGGACCGGATGAGATCACTAGGGATACTCAACAGTCAAAAGGATTGTGCATCAAACTTTGAAAATTCTACATTGCTGAAGGGTATTGATCTTAAAGCTGCTATTCCAATGAAAAAGATAAAAGCAACTGTTGTGTCTATGGTGCCAAATGAAGCATTCAAGCTACTGGAAGTGTTACTGGCTGCCTGGCAATCAAGTTCGTATAGTGCAAAGTATGTTCTTCCTTGGATATATAGCATATTAGTGAATCATGGCCACACTGTCATTGCTGAGGATTCTGCAACACATATGCTTGATTCCTTGCACAAGATTATCAATACTAGAGGGGCAACTCTCCAGCCTTTATTGCAGTTATCAGGTCGTCTGCAACTGATGACATCACAGATCGACAAGGCTTCTCAGACCATAAGTGATTCCGTGCATGATCACAAAATGGAAGAAAGTGGAGATGAGGATGAAGAGGATGAATATTTTCACGAGGAAGGAGAGGATGAATCTGAAATAAGCAGTGATGACGAAAGCTAG 1800 0.4056 MGSTTDIRGVLTAFSPSLDFFAITTGDGRVKIWDTLKGQLQTEFSDITSTDTSTNTYHSSLKGHLSIDYTCIKWLSFETKKKRKHASSLLVLGTGSGDVLAINVSAGQLTWRISDCHPGGVRAISSSANGSCIYTAGADGMICVINGLTGNLLEKFKASTKAVSSMSVSSDGRILATAASQLKVFNCSNHKKIQKFSGHPGSVRCMVFTEDDKYILSSGVGERYVAVWRINDPKKQSANCVLSMENPAVFLDSRCIDNGDGETTVCVLAISEVGVCYLWFGNSIEELRNAKPTKISLSLEEMSSSNYKGALSAIYAAKLQGIQKLSSGNVFLVYGLLAKPSFRKILVHSGTDIKLNFSRDVTALDRANAEDALLPTPKVFDSHDKEETFEDFLDKDATNDLVSSKADSFQIEDDMVEGETDVICMEDRMRSLGILNSQKDCASNFENSTLLKGIDLKAAIPMKKIKATVVSMVPNEAFKLLEVLLAAWQSSSYSAKYVLPWIYSILVNHGHTVIAEDSATHMLDSLHKIINTRGATLQPLLQLSGRLQLMTSQIDKASQTISDSVHDHKMEESGDEDEEDEYFHEEGEDESEISSDDES 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1117 599 MobiDBLite consensus disorder prediction 573 599 - -
Lal19g1117 599 SUPERFAMILY WD40 repeat-like 13 246 IPR036322 GO:0005515
Lal19g1117 599 Gene3D - 3 308 IPR015943 GO:0005515
Lal19g1117 599 Pfam Dip2/Utp12 Family 459 551 IPR007148 -
Lal19g1117 599 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 238 IPR001680 GO:0005515
Lal19g1117 599 PANTHER OS03G0300300 PROTEIN 360 598 - -
Lal19g1117 599 PANTHER OS03G0300300 PROTEIN 4 360 - -
Lal19g1117 599 Pfam WD domain, G-beta repeat 192 228 IPR001680 GO:0005515
Lal19g1117 599 Pfam WD domain, G-beta repeat 7 34 IPR001680 GO:0005515
Lal19g1117 599 MobiDBLite consensus disorder prediction 558 599 - -
Lal19g1117 599 PANTHER OS03G0300300 PROTEIN 360 598 - -
Lal19g1117 599 PANTHER OS03G0300300 PROTEIN 4 360 - -
Lal19g1117 599 SMART WD40_4 149 186 IPR001680 GO:0005515
Lal19g1117 599 SMART WD40_4 106 146 IPR001680 GO:0005515
Lal19g1117 599 SMART WD40_4 189 229 IPR001680 GO:0005515
Lal19g1117 599 SMART WD40_4 4 34 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1117 117 228 U-box Gene Family AT2G33340 26.724 3.66e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1117 K14546 - gmx:100815458 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1117 19 14766917 14776671 Lal19g1117 19 14766917 14776671 ECH