Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1111 ATGTGTGGTGGTGCTATCATCTCTGATTTTATCGATCTTCACTTCAACCGTGCTCCTAAATTGACCAATAATGATATTTGGTCTCACCTTGACGCTTTGTCTAATTACTCCTCATCCTCTTCCTCTTCTTCCTTTTCCAAACCCCTCCCACCAATTCTCCCTCAATTTCCCAACAACCAAGTGGTGGCATGTGAGAAGAAAAGTGTGGTTGGTGAAAAGGGAAGAGTTAAGAGTGAGGGAAAGAAGGTTAAGAATGAGAGGGTTAGGAAGAACATATACAGAGGAATAAGACAGAGACCATGGGGAAAATGGGCAGCTGAGATAAGGGACCCACACAAGGGTGTTCGAGTATGGCTTGGCACCTTCAACACCGCCGAAGAAGCTGCTCGTGCTTACGACGCCGCCGCCAAGCGTATCCGTGGAGATAAGGCCAAACTCAACTTCCCGGACCAACCACCCAATCCCAAGAAACCTCGCCTCACTCACCCCACTGCATCGCCACTGCCACCGCCGCCTGAGGTCCCAAAAGCCCAGAATGGTGGTGGATTTGAGCTTCAGAAATCTCTCTCCAGCCTGGAATTGTTCCTTGGTTTGGAGCATGAGGAGCCTCAACCTAAGTCTCAGCCTGAGCCTCTTCGTTTTGAGTGGGACTCCGTCTCCTCCGTGGAACCGTGGATGCTAGACGACGTCGTTTTATGCAAACGATTTTAG 711 0.4979 MCGGAIISDFIDLHFNRAPKLTNNDIWSHLDALSNYSSSSSSSSFSKPLPPILPQFPNNQVVACEKKSVVGEKGRVKSEGKKVKNERVRKNIYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFNTAEEAARAYDAAAKRIRGDKAKLNFPDQPPNPKKPRLTHPTASPLPPPPEVPKAQNGGGFELQKSLSSLELFLGLEHEEPQPKSQPEPLRFEWDSVSSVEPWMLDDVVLCKRF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1111 236 MobiDBLite consensus disorder prediction 151 176 - -
Lal19g1111 236 Pfam AP2 domain 93 141 IPR001471 GO:0003700|GO:0006355
Lal19g1111 236 SMART rav1_2 92 155 IPR001471 GO:0003700|GO:0006355
Lal19g1111 236 SUPERFAMILY DNA-binding domain 92 150 IPR016177 GO:0003677
Lal19g1111 236 CDD AP2 92 151 IPR001471 GO:0003700|GO:0006355
Lal19g1111 236 Gene3D AP2/ERF domain 92 150 IPR036955 GO:0003700|GO:0006355
Lal19g1111 236 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Lal19g1111 236 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Lal19g1111 236 MobiDBLite consensus disorder prediction 142 183 - -
Lal19g1111 236 PANTHER EREBP TRANSCRIPTION FACTOR 1 166 - -
Lal19g1111 236 Coils Coil 236 236 - -
Lal19g1111 236 PANTHER DNA-BINDING DOMAIN 1 166 IPR044808 GO:0003700|GO:0009873
Lal19g1111 236 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1111 Lal-Chr19 14723538 14724795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1111 1 231 AP2-EREBP Transcription Factor Family AT3G16770 43.446 6.07e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal19g1111 AP2 6.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1111 K09286 - tcc:18603555 187.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1111 19 14723538 14724795 Lal19g1111 19 14723538 14724795 ECH
Lal7g0957 7 15904786 15906147 Lal19g1111 19 14723538 14724795 LSH