Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1110 ATGGGAAGCGATGATCTCAATAACAAGGCTTCAGAATTCGAATATCCCTTCACCGCAAAATCAATTATCGATTGCATTCTCATTCTCTCCCTCATGATGATGATGATGATTTCCATCTACATCTACGCTCGCCGGTTCTTTCTCCGCGTTCACCACCGTCAAAACCGTCGCTCTCACTTTGTCTTCTACATTGAACCCAATATCATGGAGGTATCATCACACGGCCTTGGAGCCTCTGTGATCGCCACGCTCCCCGTCTTCACCTTCTCCTCCAACAGCGACCCTATCGAATGCTCGGTTTGTTTATCAGAATTCGAAGATGGAGAAACGGGTAGGGTTTTACCCATATGTAAACACAGTTTTCATATTGAGTGTATTGGTATGTGGTTTATGTCTCATTCTACGTGCCCACTTTGTAGAGTTCACGTGGAGTGTCCACCCCAACCGGAAGTGGTTGTTAATGCTTCTGAACTCGAACCGGGTTCGAGTTCAGAAGAGGTGAACCGGGTTTGCTCTTCGTTAAGTAGGGGGGAAGAGTTGGTTTATGACTCGGCCGCGTCGTCGTTTAAGAGAATTTTGACCAGAGAGAGGAAAACGTCGTTAGACATAGAGCAAGGAAGGGAGGAGACTCAGTGA 636 0.4686 MGSDDLNNKASEFEYPFTAKSIIDCILILSLMMMMMISIYIYARRFFLRVHHRQNRRSHFVFYIEPNIMEVSSHGLGASVIATLPVFTFSSNSDPIECSVCLSEFEDGETGRVLPICKHSFHIECIGMWFMSHSTCPLCRVHVECPPQPEVVVNASELEPGSSSEEVNRVCSSLSRGEELVYDSAASSFKRILTRERKTSLDIEQGREETQ 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1110 211 Pfam Ring finger domain 97 140 IPR001841 -
Lal19g1110 211 CDD RING-H2_EL5_like 97 140 - -
Lal19g1110 211 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Lal19g1110 211 PANTHER RING-H2 FINGER PROTEIN ATL64 17 180 - -
Lal19g1110 211 SMART ring_2 98 139 IPR001841 -
Lal19g1110 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 146 IPR013083 -
Lal19g1110 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 17 180 - -
Lal19g1110 211 SUPERFAMILY RING/U-box 92 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1110 Lal-Chr19 14715766 14716401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1110 7 159 Rapid Response to Elicitors AT3G16720 44.848 3.90e-36 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1110 - - cit:102630393 163.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1110 19 14715766 14716401 Lal19g1110 19 14715766 14716401 ECH
Lal7g0954 7 15888221 15888958 Lal19g1110 19 14715766 14716401 LSH