Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1108 ATGGGCAACAAAAAGCGAAACCCTCCGCGTTCCAAACATTCTACGGCGGCTTCTCCGGTGACGCAATCTGCTATCGGCGGAGCCGCCGATGTTCCCGTATCACCCGACTCCGACTCATGCATGGTGGTGGTTTCTGATCTCGCACTCAATAACCCTAGCAACAAGGTTGAATTGTCCCTTCGCACTGAGGGTTCCGTTTACAGTTCAATCAAGGTCGAATGTGACAAAGCTCTAAACGCGTTTCGGCGCGGTAATCACAACAGAGCGCTTAAGATGATGAAGGATTTGTGTTACAAACACGAGGGTTCGGTTTATGCTGGGTTCACTCAGCGAGTTCAGGGCTTTGTGTTGTACAAGGTGTCATCTATTATGAATGACCCGGTTGTGAAGCAGCGACACTTGAAGAATGCTGTTGATTCGGCGCGGAAAGCCACTGAGCTTTCGCCGAACTCAATTGAGTTTTCTATGTTTTATGGTAATTTGTTGTTGGAGGCTGCGACTGAGGCGAAGGATTATGAGGATGTGGTTCAGGAGTGTGAGAGGGCTCTTGCTGTTCAGAACCCTAACGATCCGGCGAAGGAGAGTTTGCAGGATGAGAGTGAGCACAAGTCTTCCACTGAGGAGTCGCGGATAGCACATGTGCAGAGTGAGTTGAGGCAGCTGATTCAGAAGTCCAATATTGCGTCGTTATCGACTTGGATGAAGACTTTGGGTAATGGTGAGGAGAGGTTTAGGTTGATTCCGATAAGAAGGCCCGCGGAGGATCCAATGGAGATGAGGTTGGTTCAGAACAGAAGGCCAAATGAGATTAAGAAGGTTTCTAAGTCGCCCGAAGAAAGGAGAAAAGAAATTGAAGTTCGAGTGGCTGCTGCGAGGCTGTTGCAGCAGAAGTCAGAGTCACCACAATCTCCAAATGAAGCAGACAGGGAGGACAGGGAGTTGGATTCGGCTTCAGGATCTGGCCATAGAATTGGTGATAGGCGTAGTAAGTATGGGAATGCGAGAAAGAACGGGTCTACTGATGAAAGGAGGAATTGGGTGCACTCATATTGGAACTCATTGAGCTTGGAAATGAAGAAGGAGTTGCTTAGGATTAGAATTAGCGATCTGAAGTCACATTTTGGGTCGTCAAAGGATACGTTGCCAATAGATGTTTTATCAGAAGCCTTGTCCTATGTTGAGTTCAGTAAAACATGGAAATTCTGGCTTTGCAGCGAGTGTGACGAGAAACATTCTAATCCGGAATCTCACAGGCAGCATGTTATGCAGGAACACATGCGAAATCTCTTGCCGAAAATGCAGAGACTTTTGCCCCAAAATGTTGACAATGAATGGATTGATATGATTCTTAATTGTTCTTGGAAGCCTCTGGATGTTTCAGCTGCAATTAGAATGCTAGATAATAAATCAAAATTGAAGGTTTCTCCGTTCACTGAGGATTCATACTTCGGGCCTCATACTCATAAATATGCTCATACTCAGAACTTCAATGATTGTTTTAAAGATGCAAGTGATTCTTACCACGAGAAGGAAAGTTTGCGGTATGATCTTCATAATGGTACAACAAAAGTCAGTGACTATTGTGAAATTGCAGGAGGTAATGTTACAGAAGGCCTTGAAGATCAAGGATCTATAACATACCCTTGTGCAGATAATTGGCCAGTATCTGATGACTCAGAGCGTGCCAAACTTTTGGAGAAAATTCATGTAGTATTTGAAATGCTTATCAGGCACAAATTTCTTGCTGCTACTCATCTGAAGAAAGTCATACAATTTACTATGGGTGAGATACAGGGTCTTTCTTCTGGTTCTCAACTTGTAAACCGTGGTGTTGATCAAACACCTATGTGCATATGCTTTTTGGGAGCCTCACAGCTCAAGAAAATTCTCCAATTTCTGCAGGAGCTTTCTCAGGCTTGTGGATTGGGTAGATATCCTGACAAAAGTAATGGTCCCATGAATGATTCACACAATATCAGTCAAGTTCCTGAGATCAAAGAGAAGATTGTTCTCAATGGAGATTCGTCATGTCTCCTTCTGGATGAGTGTTTACTGCTAACGCAAGTCACTCTTGGCACAGCCCAGGGGTTTTTCTTGGATGATGTTACTTCCCCAGGTTCTCCTGATGGGATTTCAAGTAATAAGGACGCTTTCCTATCCTGGATATTTTCAAGTTCACACGTAGGAGATCAATTGACATCATGGATTCGGACCAAAGAAGATAAAAAAAATCAAGGAAAAGAAATTGTTGAGATGCTTGAGAAGGAGTTTTTACAGCTACAGGGCCTCTGTGAGAAGAAGTTTGGGCGTATAAGTTATGAGGAAGCACTGCAGACAGTTGAGAATCTGTGTCTTGAAGAAGGTAAAAAGAGGGAACATGGTGGTGAATTTGTCCAACGTAGCTATGAGTCTGTTTTAAGAAAGCGAAGAGAAGAGCTCACCGAGACTGAGAATGATGTGGCATATGTAAGCAATAGGTTTGAGTTGGATGCTATATCAAATGTTCTTCAAGAAGCAGAAGCGATGAATGTTAACCAATTTGGTTATGAGGAAACTTATGCGGGTGTGAATTCTCAATTATGTGACTTAGAATCTGGTGAAGAGGATTGGAGAATGAAGGACTACTTGCATCAAATGGATGGTTGTATAGAAATTGCTATTCAGAAACTTAAAGAGCACTTATCTATAGAGCTTAGCAAAATTGATGCACGAATCATAAAAAATGTTACAGACATGCAGCAAATGGAACTCAAGCTTGGGCCTATTTCTGCCTATGATTATCGAGCAATATTATTGCCTCTAGTGAAGTCGTACCTAAGGGCAGTTTTGGAAGATTTGGCTGAGAAAGATGCAACAGAGAAGTCTGATGCTGCAAGAGAAGCATTTTTGGCTGAACTTGCTCTTGATTCCAAGAAGGTTAAAGGGGGAAGTGAGAACACAAGACATTTGGATAAGACTAGAGATAAGAAGAAGAATAAGGATCACAGGAAAACAAGAGATTTTAAGGCTACAAGTGGTAATGAGCAGCTCTTGCATCGAGATACAATTCCTTATTCCAATCCAGTTGCACCTGATATTGACTTTCAAGATGTGGTTGTTACTGTGAATGCTAATGACTTGGAACAACAGGAAGAAGAATTTAAACGTAAAATTGAACTAGAAGAGGAGGAGAAAAAACTTGAAGAAACTCTGGAATTTCAACGAAGGATAGAAAATGAAGCTAAACAGAAGCACCTTGCCGAGCAACAAAAGAAATCATCTGGGATCTATTTAGAGGAAGTGGTGGACAAACTTCAGGATGCCCAATTGGAGGCAGTTGCTGATGGCCCAGATGTGCTTGAACATTTAAGACCACATACACAGGAGCAGTTGGCAAAGGAGAATGGGTTCCCAAGCAATCTGGATAGTGTGCTTATCACCCCAGCAAATGGTTCTTTGGGGGAAGACAAGTCAGCTGATTCAACTTCCCAAAAGATTGGTTATTTGCATGCGACTAAAGTTAAACAAGATCTGCCTAATGGAGTTGTTTCAGAAAATGGTCTTCAGTTGACTGATAGGCGTCAAGGCAAAAAGAATAGACGTCATAAGAATTCTTCCAGAATGGTTGATGGGAAGTTTGAACCCGTCTCATCGGAAAAAGAGAAGACTGAGAATACAGACACCAACAATCATTTAAGAGAGCAGATTAAATCCCATAACAATCAAGATGCTAGCAATGTTATCTTCTATCAGAGTCACCTATACCTGGGTTTATGTAGTAATTGTCTGTTAGATCAAAATCGCGTTCCTATTCGTGAGATCGTACGACTTTACGATCCTCGACCTCCAATCCGTGCTCGATCTCAGTCTTGGGTGCGTCTCCATAGGATCAGGTGGGATCGTCGTGCAGCATGGGAAAACAATGGATCAAATGCATTGAAGGAGTTGAAAATGAAAGATGAGGAGGAGGAAAGATTCCAAGCTGATCTTAAGAGAGCTGTACGGCAAAGTCTGGACACATATCAAGCACATATCAAAATGCCTCCAGTTTCCGGTTTAAGAATGTTTGAGATAGCCTCCTCACAAGTAGATAGTTCTGATTTTGTACCAGAGGGAGTCCCAACCAAGGATGTGAGTGGAGGAGCTCCTTTGCTTGGTTCTGGGCTAAAGAATGAAGTTGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCATTGTGGCATATAAGACGTTTCCGGGAGGAATTTCTTGGCAGATCAAGGTCAGAGCATGATCATGTGGGTAACCCCTGTGTTGTCTGTGCCTTGTATGAAATCTTCACTGCATTGAATCTTGCATCAAAGGATTCAAGTACAGAAGCAGTTGCACCTACTTCCCTGCGAATGGCTCTAAGCAACTTGTATCCGGATAGTAACTTCTTTCAAGAGGCTCAGATGAACGATGCTTCTGAGGTGCTGGCAGTGATATTTGACTGCCTTCATCGATCTTTTACTCGTGGTTCAAGTGTTTCTGATGCAGAATCAGTGGAAAGCAACTGCATGGGATCTTGGGATTGTGCAAACAGAACTTGTATTGCACATTCACTTTTTGGAATGGACATTTTTGAACAAATGAATTGCTACCATTGTGGTCTCGAATCCAGACATTTGAAGTATACTTCTTTCTTTCACAATATAAATGCCAATGCCCTCCGGACAATGAAGGACATGTGTTCTGAAACCGAAAGCTCCTTTGATGAGCTTTTGAATCTTGTGGAGATGAACCATCAGTTAGCTTGTGATCTAGAAGTTGGTGGCTGTGGCAAGCTCAATTACATCCATCACTTTCTTTCAGCCCAACCCCATGTTTTTATGACAGTTCTAGGTTGGCAAAATACATGCGAGAGTGCTGATGATATAAAAGGTACACTGGCAGCCTTGAGCATCGAGTTAGATATCAGTGTCCTTTATCGTGGTCTAGATCCTAAAAGTACCCATAGCTTGGTTTCGATGGTTTGCTACTATGGCCAACATTATCATTGCTTTGCATATAGCCACGACCATCAACAATGGATAATGTATGATGACAAGACTGTCAAGATAATTGGTGGATGGGCTGATGTTCTTACCATGTGTGAAAGAGGCCATCTACAACCTCAGGTTCTTTTCTATGAAGCTGTAAACTAG 5148 0.4242 MGNKKRNPPRSKHSTAASPVTQSAIGGAADVPVSPDSDSCMVVVSDLALNNPSNKVELSLRTEGSVYSSIKVECDKALNAFRRGNHNRALKMMKDLCYKHEGSVYAGFTQRVQGFVLYKVSSIMNDPVVKQRHLKNAVDSARKATELSPNSIEFSMFYGNLLLEAATEAKDYEDVVQECERALAVQNPNDPAKESLQDESEHKSSTEESRIAHVQSELRQLIQKSNIASLSTWMKTLGNGEERFRLIPIRRPAEDPMEMRLVQNRRPNEIKKVSKSPEERRKEIEVRVAAARLLQQKSESPQSPNEADREDRELDSASGSGHRIGDRRSKYGNARKNGSTDERRNWVHSYWNSLSLEMKKELLRIRISDLKSHFGSSKDTLPIDVLSEALSYVEFSKTWKFWLCSECDEKHSNPESHRQHVMQEHMRNLLPKMQRLLPQNVDNEWIDMILNCSWKPLDVSAAIRMLDNKSKLKVSPFTEDSYFGPHTHKYAHTQNFNDCFKDASDSYHEKESLRYDLHNGTTKVSDYCEIAGGNVTEGLEDQGSITYPCADNWPVSDDSERAKLLEKIHVVFEMLIRHKFLAATHLKKVIQFTMGEIQGLSSGSQLVNRGVDQTPMCICFLGASQLKKILQFLQELSQACGLGRYPDKSNGPMNDSHNISQVPEIKEKIVLNGDSSCLLLDECLLLTQVTLGTAQGFFLDDVTSPGSPDGISSNKDAFLSWIFSSSHVGDQLTSWIRTKEDKKNQGKEIVEMLEKEFLQLQGLCEKKFGRISYEEALQTVENLCLEEGKKREHGGEFVQRSYESVLRKRREELTETENDVAYVSNRFELDAISNVLQEAEAMNVNQFGYEETYAGVNSQLCDLESGEEDWRMKDYLHQMDGCIEIAIQKLKEHLSIELSKIDARIIKNVTDMQQMELKLGPISAYDYRAILLPLVKSYLRAVLEDLAEKDATEKSDAAREAFLAELALDSKKVKGGSENTRHLDKTRDKKKNKDHRKTRDFKATSGNEQLLHRDTIPYSNPVAPDIDFQDVVVTVNANDLEQQEEEFKRKIELEEEEKKLEETLEFQRRIENEAKQKHLAEQQKKSSGIYLEEVVDKLQDAQLEAVADGPDVLEHLRPHTQEQLAKENGFPSNLDSVLITPANGSLGEDKSADSTSQKIGYLHATKVKQDLPNGVVSENGLQLTDRRQGKKNRRHKNSSRMVDGKFEPVSSEKEKTENTDTNNHLREQIKSHNNQDASNVIFYQSHLYLGLCSNCLLDQNRVPIREIVRLYDPRPPIRARSQSWVRLHRIRWDRRAAWENNGSNALKELKMKDEEEERFQADLKRAVRQSLDTYQAHIKMPPVSGLRMFEIASSQVDSSDFVPEGVPTKDVSGGAPLLGSGLKNEVGEYNCFLNVIIQSLWHIRRFREEFLGRSRSEHDHVGNPCVVCALYEIFTALNLASKDSSTEAVAPTSLRMALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTRGSSVSDAESVESNCMGSWDCANRTCIAHSLFGMDIFEQMNCYHCGLESRHLKYTSFFHNINANALRTMKDMCSETESSFDELLNLVEMNHQLACDLEVGGCGKLNYIHHFLSAQPHVFMTVLGWQNTCESADDIKGTLAALSIELDISVLYRGLDPKSTHSLVSMVCYYGQHYHCFAYSHDHQQWIMYDDKTVKIIGGWADVLTMCERGHLQPQVLFYEAVN 1715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1108 1715 Coils Coil 162 182 - -
Lal19g1108 1715 MobiDBLite consensus disorder prediction 303 340 - -
Lal19g1108 1715 MobiDBLite consensus disorder prediction 1173 1221 - -
Lal19g1108 1715 CDD Peptidase_C19 1471 1712 - -
Lal19g1108 1715 MobiDBLite consensus disorder prediction 1199 1221 - -
Lal19g1108 1715 Pfam Protein of unknown function (DUF629) 347 884 IPR006865 -
Lal19g1108 1715 Pfam Ubiquitin carboxyl-terminal hydrolase 1389 1711 IPR001394 GO:0004843|GO:0016579
Lal19g1108 1715 SUPERFAMILY Cysteine proteinases 1381 1712 IPR038765 -
Lal19g1108 1715 Coils Coil 736 756 - -
Lal19g1108 1715 Pfam Protein of unknown function (DUF627) 76 186 IPR006866 -
Lal19g1108 1715 MobiDBLite consensus disorder prediction 974 1017 - -
Lal19g1108 1715 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1380 1714 IPR028889 -
Lal19g1108 1715 MobiDBLite consensus disorder prediction 194 212 - -
Lal19g1108 1715 Coils Coil 1037 1077 - -
Lal19g1108 1715 MobiDBLite consensus disorder prediction 258 340 - -
Lal19g1108 1715 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1310 1715 - -
Lal19g1108 1715 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1239 - -
Lal19g1108 1715 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1310 1715 - -
Lal19g1108 1715 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 1239 - -
Lal19g1108 1715 MobiDBLite consensus disorder prediction 258 288 - -
Lal19g1108 1715 Gene3D Cysteine proteinases 1377 1713 - -
Lal19g1108 1715 Gene3D Tetratricopeptide repeat domain 68 208 IPR011990 GO:0005515
Lal19g1108 1715 MobiDBLite consensus disorder prediction 1 34 - -
Lal19g1108 1715 MobiDBLite consensus disorder prediction 184 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1108 Lal-Chr19 14693207 14703621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1108 1302 1712 C2H2 Transcription Factor Family AT3G47890 69.417 0.0 615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0952 7 15855772 15866455 Lal19g1108 19 14693207 14703621 LSH