Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1103 ATGTCTCCCACCTTCACCACCGCTGACTCCGCCGTCTCCGGTGAAATCATGCTGTTCGGAGTTAGGGTGGTAGTTGATTCAATGAGGAAGAGTGTGAGTATGAACAATCTCTCACAGTACGAGCTTCCTCAACATCCCTCTTCGAACAACACCACCAGCAAAGATGATCTTGCCGCCGGTTATGCCTCCGCCGATGACGCCGTCCCACATAACTCCGGCAAGCACCGCGAGCGCAAGCGAGGGGTTCCGTGGACGGAGGAAGAGCACAAGCTGTTCTTGGTGGGATTGCAGAAAGTGGGGAAAGGTGATTGGAGAGGAATCTCCAGGAACTATGTCAAGACCCGAACACCTACCCAGGTTGCCAGCCATGCTCAGAAGTACTTTCTCCGCCGCACTAACCTTAATCGCCGCCGCCGCAGATCTAGCCTCTTTGACATCACCACTGACACGGTCCCAATGGTGGAAGAACAGATCAAGAATCAAGATTGTGTGTCTCATTCACAGCCTATCTACCCTGCGGCCACTGAAACTAGCAACATGAATGGATTTCAAATGATGCCGATGTACCCGGTGGGTGATGGTTCTGGAATGTTTTCAGTCCAGGCTCAGAATCCAATGGAAGAACTCACTCTGGGACAAGGAAGGATGGAACACAACGTTTCAACCAACCGAGTTCTTCCAATTCCTAAAGCTTCCACAGTGCCTGATATTGTCTCCAATTCAAGTTCAACGATTGACCCACCAACACTGTCCCTTGGGATATCTTTCTCATCTGATCAAAGACAAACATCATCAAGACATTCACCTTTACATGGAATGCCTCATTTCAATAATGGAGATAGCATCATAAGTGTTGCTTGA 861 0.4936 MSPTFTTADSAVSGEIMLFGVRVVVDSMRKSVSMNNLSQYELPQHPSSNNTTSKDDLAAGYASADDAVPHNSGKHRERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDTVPMVEEQIKNQDCVSHSQPIYPAATETSNMNGFQMMPMYPVGDGSGMFSVQAQNPMEELTLGQGRMEHNVSTNRVLPIPKASTVPDIVSNSSSTIDPPTLSLGISFSSDQRQTSSRHSPLHGMPHFNNGDSIISVA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1103 286 MobiDBLite consensus disorder prediction 236 286 - -
Lal19g1103 286 Pfam Myb-like DNA-binding domain 83 128 IPR001005 -
Lal19g1103 286 SUPERFAMILY Homeodomain-like 78 132 IPR009057 -
Lal19g1103 286 MobiDBLite consensus disorder prediction 236 271 - -
Lal19g1103 286 Gene3D - 82 134 - -
Lal19g1103 286 CDD SANT 83 128 IPR001005 -
Lal19g1103 286 ProSiteProfiles Myb-like domain profile. 76 128 IPR001005 -
Lal19g1103 286 ProSiteProfiles SANT domain profile. 79 132 IPR017884 -
Lal19g1103 286 SMART sant 80 130 IPR001005 -
Lal19g1103 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 132 IPR017930 -
Lal19g1103 286 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 79 130 IPR006447 GO:0003677
Lal19g1103 286 PANTHER KIN2 13 286 - -
Lal19g1103 286 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 13 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1103 Lal-Chr19 14673865 14676131 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal19g1103 Myb_DNA-binding 7.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1103 - - gmx:778057 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1545 14 16157945 16160207 Lal19g1103 19 14673865 14676131 LSH
Lal7g0944 7 15789900 15796345 Lal19g1103 19 14673865 14676131 LSH