Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1097 ATGTCTTCATCTTCCGCCATACCTCACACTTATAACCGCAAACAAAAATCCCTCAGTCTCCTATGCACTAATTTTTTGAACTTGTATAACCGAGAAGAGATCCACTTCATTGGTCTCGACGCCGCCGCAGCTAAGTTAAGTGTGGAGAGAAGGCGAATCTACGATATTGTCAATGTTCTCGAGAGTATTGGTGTTCTTTCTAGAAGGGCTAAGAATGAATACACTTGGAAAAGCTATGCTGCTATTCCACGTGCTTTACAATAA 264 0.4167 MSSSSAIPHTYNRKQKSLSLLCTNFLNLYNREEIHFIGLDAAAAKLSVERRRIYDIVNVLESIGVLSRRAKNEYTWKSYAAIPRALQ 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1097 87 PANTHER TRANSCRIPTION FACTOR E2F 4 87 IPR015633 GO:0000978|GO:0006357
Lal19g1097 87 SMART E2F_TDP_2 13 78 IPR003316 GO:0005667|GO:0006355
Lal19g1097 87 Pfam E2F/DP family winged-helix DNA-binding domain 14 77 IPR003316 GO:0005667|GO:0006355
Lal19g1097 87 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 4 87 - -
Lal19g1097 87 Gene3D - 7 80 IPR036388 -
Lal19g1097 87 SUPERFAMILY "Winged helix" DNA-binding domain 12 76 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1097 Lal-Chr19 14630549 14634029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1097 9 87 E2F-DP Transcription Factor Family AT3G48160 75.949 1.44e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lal19g1097 E2F_TDP 3.6e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1097 K09391 - tcc:18603825 136.346
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1097 19 14630549 14634029 Lal19g1097 19 14630549 14634029 ECH
Lal14g1539 14 16121156 16135165 Lal19g1097 19 14630549 14634029 LSH
Lal7g0937 7 15744635 15748421 Lal19g1097 19 14630549 14634029 LSH