Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1076 ATGGACCTTGAAACAAATACAAGAGAAAACTATGCCTCACAGCCAATGCATTTGCAAGAAAACTGTTCGAGACAACTCGGCGCGAAAGATGCGCTTCCTCTCAGGTCTCCTTCCATGCAGGGCTCCATGCAAGACTTTCAGCATGTTGATCAGTTTCATCATGCTAATGGCTCCTTGCCTAATCAAGTTTTTGGGGTCCAAACTCAAAATTTTGATCCTTTTGCTAATGTAACATGTGGGTGTTCAAAGGCAGATTTTAATGGTTATGAGTGCAAGGTTTTTGTTGAGAATAATAGTAGTAGTAGCCAGGCTCATGTTATAGACAATTTTCAATATGATGGCTATGGATTGAATCCTCATAGGAGGAGTCAAATGGATATGATGGCTTCAAACCAAAGCTATTTGCCTTTTAATCCTCTAGAAACCAAGCCTTCAAACTTTGTTGCACCTGATGAAGTCTCATGCATATCACCAGCAGTTTATGAAAGTAGAATTGGCTTGAATAGAAGTAATAAGACATCTCTAACCACTAGAAGATCTTGCAAAGTAAGGAATAAGATCAACATAGTGAAGGGGCAATGGACTGAAAATGAAGACAGATTGTTGATTCAATTGGTGGAACAATATGGAGTGAGGAAGTGGGCTCATGTTGCTCAGTCATTGCCTAGCAGAATTGGCAAACAGTGCAGAGAGAGATGGCATAACCATTTAAGACCTGACATTAAGAAGGAAGTATGGACTGATGAAGAGGATAAAATACTGATCCAAGCACATGCTGAGATAGGAAATAAGTGGGCAGAGATTGCAAAAAGATTACAAGGAAGAACTGAGAACTCAATCAAAAATCACTGGAATGCAACAAAAAGAAGGCAATATTCCAAAAGAAAATGCTGTTCAAAGCACTATTCTTCAGGATTATATAAAGAGCTTGAACTTGGACAAAACACTCCAAAACAATATACAACACAACCCTCTTCTAATACTATGAGAAAAAAAGCTAGCACAAGCAAAGCAGCAACTACAGCTACTCAACAACATAGTACAAGTCAAGTTAGTTCTAATGACCGGTTGGTGCCAAATTATGAGTTTAATGAGGACCCAGATTTTTGTTTCCATGATAATATGTTTCATGAAGGGTGTAGTATTGATTCTTTGCTAGATAATATGCCATGTGCTCTTACTACATATGAGAAAGATTTTGATGCAAAAGTGCTATGTGCTTCTAATAACAAGAAGGGAAAACAAGTTGTGAATGTTGATGAGCATAATCATTTTGAGACAGAGATGCCACAAGATATGGAGGGGAATGAAGTTAAGAAGGATATACACATACCAGAAGTTACAACAAATTACAAAGTATAG 1362 0.3781 MDLETNTRENYASQPMHLQENCSRQLGAKDALPLRSPSMQGSMQDFQHVDQFHHANGSLPNQVFGVQTQNFDPFANVTCGCSKADFNGYECKVFVENNSSSSQAHVIDNFQYDGYGLNPHRRSQMDMMASNQSYLPFNPLETKPSNFVAPDEVSCISPAVYESRIGLNRSNKTSLTTRRSCKVRNKINIVKGQWTENEDRLLIQLVEQYGVRKWAHVAQSLPSRIGKQCRERWHNHLRPDIKKEVWTDEEDKILIQAHAEIGNKWAEIAKRLQGRTENSIKNHWNATKRRQYSKRKCCSKHYSSGLYKELELGQNTPKQYTTQPSSNTMRKKASTSKAATTATQQHSTSQVSSNDRLVPNYEFNEDPDFCFHDNMFHEGCSIDSLLDNMPCALTTYEKDFDAKVLCASNNKKGKQVVNVDEHNHFETEMPQDMEGNEVKKDIHIPEVTTNYKV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1076 453 Pfam Myb-like DNA-binding domain 244 285 IPR001005 -
Lal19g1076 453 Pfam Myb-like DNA-binding domain 191 237 IPR001005 -
Lal19g1076 453 ProSiteProfiles Myb-like domain profile. 238 288 IPR001005 -
Lal19g1076 453 CDD SANT 194 237 IPR001005 -
Lal19g1076 453 SMART sant 242 290 IPR001005 -
Lal19g1076 453 SMART sant 190 239 IPR001005 -
Lal19g1076 453 CDD SANT 246 288 IPR001005 -
Lal19g1076 453 SUPERFAMILY Homeodomain-like 188 284 IPR009057 -
Lal19g1076 453 Gene3D - 190 242 - -
Lal19g1076 453 PANTHER BNAC03G62830D PROTEIN 101 384 - -
Lal19g1076 453 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 242 292 IPR017930 -
Lal19g1076 453 ProSiteProfiles Myb-like domain profile. 186 237 IPR001005 -
Lal19g1076 453 PANTHER MYB PROTEIN-RELATED 101 384 - -
Lal19g1076 453 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 241 IPR017930 -
Lal19g1076 453 MobiDBLite consensus disorder prediction 317 358 - -
Lal19g1076 453 Gene3D - 245 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1076 Lal-Chr19 14486446 14488482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1076 86 404 MYB Transcription Factor Family AT4G18770 45.593 3.98e-83 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal19g1076 Myb_DNA-binding 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1076 K09422 - gmx:100816653 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1076 19 14486446 14488482 Lal7g0917 7 15631707 15633667 ECH
Lal19g1076 19 14486446 14488482 Lal19g1076 19 14486446 14488482 ECH
Lal7g0917 7 15631707 15633667 Lal19g1076 19 14486446 14488482 LSH
Lal21g0733 21 6005654 6007672 Lal19g1076 19 14486446 14488482 PCT