Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1075 ATGCAGAGTTCCACTTTCACTCTTTCCCCTTCTCTCTTTCTTTCTCACCAAAAACTTCGTACCCGCTTCTACCCTTTACGTTTTCAACCTTCCAAAACCAACGTTAATGTCTCTTCCCCGTTTCACCCATCGTCTCTTTCTTCTTCTTCTTTTTCTTTCAAACTCAGGCCATTGACAACCCTCATCCGCTTTCAAACCAAAGCTACCTCCGTGCCGGAGAGCGCCGGAGACGCCGCTTCTGACTCCGGCGCTCTATTCAGAACTCTTGAACTTGGAGCTTTGTTTGGCATGTGGTTCATCTTTAACATATATTTCAATATCTATAATAAACAGGTTTTGAAGGTGTATCCATATCCATTAACAATCACTGCAGTTCAATTTGCCATTGGAACTGTAATTGTATCATTGATGTGGGGTTTAAATCTGTATAAGAGGCCTAAGATCAGTAATGCTCAGCTTGCAGCAATATTGCCACTAGCTATGGTGCATACTTTAGGGAACCTTTTCACCAATATGAGTCTTGGAAAGGTTGCTGTGTCTTTTACTCATACAATCAAAGCATCCGAGCCTTTCTTTTCGGTCATCCTTTCTGCTATGTTCCTTGGAGAGATGCCTACAGCATGGGTGGTTGCTTCCCTTGTTCCTATTGTTGGTGGAGTTGTATTGGCATCTGTTACAGAAGCATCTTTTAATTGGATTGGATTTTGGAGTGCAATGGCTTCCAATTTGACAAATCAATTTCGTAATGTTCTTAGCAAAAAAGTCATGGTTAAGAAAGAGGATTCTATTGACAACATAACCCTCTTCTCAATAATAACAGTTATGTCCTTCTTGTTGTCTGCTCCTGTTGTTATCTTCGCCGAGGGCATCAAATTTACCCCTTCTTACCTGCAAGCCGCTGGATTAAATATTAATGAAGTATATATCAGATCTCTTCTTGCTGCACTATGTTTCCATGCATATCAACAAGTTTCTTATATGATACTACAAAGAGTATCACCTGTGACCCACTCTGTAGGAAATTGTGTGAAGCGTGTTGTGGTTATTGCCAGCTCTGTCCTCTTCTTCAAAACACCTGTTTCACCTGTTAATGCATTTGGAACTGCTATAGCTCTTGCAGGTGTTTTCCTCTATTCTAGGGTGAAGAGAATTAAGGCAAAGACAGCTTAA 1170 0.4085 MQSSTFTLSPSLFLSHQKLRTRFYPLRFQPSKTNVNVSSPFHPSSLSSSSFSFKLRPLTTLIRFQTKATSVPESAGDAASDSGALFRTLELGALFGMWFIFNIYFNIYNKQVLKVYPYPLTITAVQFAIGTVIVSLMWGLNLYKRPKISNAQLAAILPLAMVHTLGNLFTNMSLGKVAVSFTHTIKASEPFFSVILSAMFLGEMPTAWVVASLVPIVGGVVLASVTEASFNWIGFWSAMASNLTNQFRNVLSKKVMVKKEDSIDNITLFSIITVMSFLLSAPVVIFAEGIKFTPSYLQAAGLNINEVYIRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIASSVLFFKTPVSPVNAFGTAIALAGVFLYSRVKRIKAKTA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1075 389 SUPERFAMILY Multidrug resistance efflux transporter EmrE 308 382 - -
Lal19g1075 389 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 89 387 IPR004696 GO:0016021|GO:0022857|GO:0055085
Lal19g1075 389 PANTHER SOLUTE CARRIER FAMILY 35 64 364 - -
Lal19g1075 389 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 64 364 - -
Lal19g1075 389 Pfam Triose-phosphate Transporter family 90 379 IPR004853 -
Lal19g1075 389 SUPERFAMILY Multidrug resistance efflux transporter EmrE 138 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1075 Lal-Chr19 14481190 14485193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1075 1 387 Antiporters AT5G33320 67.482 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1075 K15283 - qsu:112040756 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1075 19 14481190 14485193 Lal7g0916 7 15626731 15630641 ECH
Lal19g1075 19 14481190 14485193 Lal19g1075 19 14481190 14485193 ECH
Lal7g0916 7 15626731 15630641 Lal19g1075 19 14481190 14485193 LSH
Lal19g1075 19 14481190 14485193 Lal17g0911 17 7054774 7058310 PCT
Lal19g1075 19 14481190 14485193 Lal21g0734 21 6010706 6020552 PCT
Lal17g0911 17 7054774 7058310 Lal19g1075 19 14481190 14485193 PCT
Lal21g0734 21 6010706 6020552 Lal19g1075 19 14481190 14485193 PCT