Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1057 ATGGGTCGCCATTCATGTTGTGTAAAGCAAAAATTGAGGAAAGGTTTATGGTCCCCTGATGAAGATGAAAAGCTCTTCAATTACATAACTAGATTTGGTGTTGGGTGCTGGAGTTCTGTTCCTAAACTTGCTGCACTTCAAAGATGTGGAAAGAGTTGCAGGTTGAGATGGATAAATTATTTGAGGCCTGATTTAAAGAGAGGAATGTTCTCACAGCAGGAAGAGGATCTTATAATAAGTCTTCATGAAGTTCTTGGAAATAGGTGGGCTCAAATTGCAGCACAATTACCGGGAAGAACAGATAATGAGATTAAAAACTTTTGGAATTCATGTTTGAAGAAGAAGCTATTCAAGCAAGGGATTGACCCAACAACACATAAGCCTCTCAATGAAGGTAATGTGAAGGAAGAGAAAACAAAAATGGAGTCACCACAATCTATGCAAATACCATTCTCACAAGGACATTCAGCTACTATATCAACCTTATTACCTTCACAAGGTTCACCACATCTAATAAGTGATTCAAATTACTATGATGATGGAAAGTTAGCAGAAACTTCAAGAGAAATTTTCATGGGGAAGCAAACATTAGACCCTTTATCTTACTATGATAATTTCCAAATGACTGTTGAACAAAACTCTGATTATGGTTTACCTGTGAGTACTAATTATCAAACAAGCATTATGACATTGTTCGATCAGAACCAGTTTCCAACTAACTCAAACTATTGCTTCTCTTCAATGCCAAGCCTGACCAATTCGGATCACGTGACAGAGTTTTCTTCAGACAACAACTCAGGTTCTAAAATCAGCTCCTTGCTCATGAATGATAATAATAATAATAATAATCAGGTGAAAGAAAGTTCAAGCAATAATAGCTCAAACATGTGCATTTATACATCAGAAGGAGGGTATCAGATGATGGAAAATGCTGCAGGGTTCTCTTGGGATACTGAGAACAAATTAGACCCTTTGTTTCAGTTCAATGCCATAAAATCAGAAGATTCCAAGACAAATAATTCATGGGAAGAAGGGCAACATCATTTGCAGACTCATGGTTCAATAGATTTCAGTAACTATCCCTTAACATCACTATCAGAAGATCTAACAGGAACAAGCTTTGATGTATTCCAGCATATATGA 1143 0.3666 MGRHSCCVKQKLRKGLWSPDEDEKLFNYITRFGVGCWSSVPKLAALQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLFKQGIDPTTHKPLNEGNVKEEKTKMESPQSMQIPFSQGHSATISTLLPSQGSPHLISDSNYYDDGKLAETSREIFMGKQTLDPLSYYDNFQMTVEQNSDYGLPVSTNYQTSIMTLFDQNQFPTNSNYCFSSMPSLTNSDHVTEFSSDNNSGSKISSLLMNDNNNNNNQVKESSSNNSSNMCIYTSEGGYQMMENAAGFSWDTENKLDPLFQFNAIKSEDSKTNNSWEEGQHHLQTHGSIDFSNYPLTSLSEDLTGTSFDVFQHI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1057 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal19g1057 380 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lal19g1057 380 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal19g1057 380 PANTHER MYB DOMAIN PROTEIN 55 1 374 - -
Lal19g1057 380 CDD SANT 70 109 IPR001005 -
Lal19g1057 380 PANTHER MYB TRANSCRIPTION FACTOR 1 374 - -
Lal19g1057 380 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lal19g1057 380 CDD SANT 17 61 IPR001005 -
Lal19g1057 380 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal19g1057 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal19g1057 380 Gene3D - 11 67 - -
Lal19g1057 380 SMART sant 66 114 IPR001005 -
Lal19g1057 380 SMART sant 13 63 IPR001005 -
Lal19g1057 380 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal19g1057 380 Gene3D - 69 145 - -
Lal19g1057 380 MobiDBLite consensus disorder prediction 256 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1057 Lal-Chr19 14342837 14344834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1057 1 137 MYB Transcription Factor Family AT1G57560 79.562 2.02e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal19g1057 Myb_DNA-binding 8.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1057 K09422 - gmx:100811140 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1057 19 14342837 14344834 Lal19g1057 19 14342837 14344834 ECH
Lal14g1499 14 15895313 15897259 Lal19g1057 19 14342837 14344834 LSH
Lal7g0912 7 15588378 15590087 Lal19g1057 19 14342837 14344834 LSH