Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1055 ATGACAACGAGGTTCAAGAAGAACAGAAAGAAGAGAGGCCACGTCAGCGCCGGTCACGGTCGTATCGGAAAGCACCGCAAGCATCCTAGCGGAAGAGGTAATGCCGGTGGAATGCACCACCACCGAATCCTCTTTGACAAGTACCATCCTGGTTACTTCGGTAAGGTAGGTATGCGTTATTTCCACAAGCTTCGTAACAAGTTCTATGCCCCAATCGTTAACATCGATAAGCTATGGTCACTGGTTCCTCAAGAGGTGAAGGATAAGGCTGCGAAGGAACAGGGTAAGGCTCCTTTGATCGATGTTACGCAGTTTGGGTACTTCAAGGTTTTGGGTAAAGGGGTTTTGCCTGAGAATCAGCCTATTGTGTTGAAAGCGAAGCTTGTTTCGAAGATTGCGGAGAAGAAAATCAAGGAGGCTGGTGGTGCTGTTATTCTCACTGCTTGA 447 0.481 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPSGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYAPIVNIDKLWSLVPQEVKDKAAKEQGKAPLIDVTQFGYFKVLGKGVLPENQPIVLKAKLVSKIAEKKIKEAGGAVILTA 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1055 148 MobiDBLite consensus disorder prediction 1 35 - -
Lal19g1055 148 Hamap 50S ribosomal protein L15 [rplO]. 1 147 IPR030878 GO:0003735|GO:0006412|GO:0015934
Lal19g1055 148 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 148 - -
Lal19g1055 148 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 148 - -
Lal19g1055 148 MobiDBLite consensus disorder prediction 1 37 - -
Lal19g1055 148 SUPERFAMILY Ribosomal proteins L15p and L18e 6 147 IPR036227 -
Lal19g1055 148 Gene3D - 58 148 - -
Lal19g1055 148 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 29 144 IPR021131 -
Lal19g1055 148 ProSitePatterns Ribosomal protein L15 signature. 109 141 IPR001196 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1055 Lal-Chr19 14326047 14326493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1055 1 148 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 84.459 7.45e-90 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1055 K02900 - gmx:100798197 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1055 19 14326047 14326493 Lal7g0908 7 15559103 15561620 ECH
Lal19g1055 19 14326047 14326493 Lal19g1055 19 14326047 14326493 ECH
Lal14g1497 14 15886077 15886523 Lal19g1055 19 14326047 14326493 LSH
Lal7g0908 7 15559103 15561620 Lal19g1055 19 14326047 14326493 LSH