Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1049 ATGGAGATGGAACGCGTATTCGAATTTCCTCACACTCACATGGATCGACGCCCAAGAAAGAGAGCGAGATTAGGCTGGGACATCCCTGAGGTCCCGAAGGCTCAGGTAGGATTGTTTTGTGGACAAGAGATTGAGAATATTTCAAGCTATGCTCCTTCATTGGGTCCCTCAGAACATATCACTAGTTCTCTATTCGCTAAGGGAATTGCTCGAAATGGTTCTCCCCCTTGGCGAGAAGATGACAAAGATGGACATTACATGTTTGCGATTGGAGATAATTTAACATCTCGCTACAAGATTCATAGCAAAATGGGAGAAGGAACTTTTGGGCAGGTCTTGGAATGCTGGGACAGAGAAAAGAAGGAAATGGTTGCCATAAAAATTGTACGAGGGGTAAAGAAGTATCGTGAAGCAGCCATGATAGAAATTGAGGTATTGCAACAGCTTGGGAAACATGATAAAGGTGGCAACCGTTGTGTACAATTACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATATGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGACCTTGTCCTCATGCATGATTTGTCTATGATCCATACTGACCTGAAACCTGAAAACATACTTCTAGTATCACCGGAGTATGTCAAAGTTCCTGACTACAAGAGTTCATCCAGATCACCGAGTTCCTATTTCAAAAGAGTGCCCAAATCTAGTGCTATAAAGGTTATTGATTTTGGCAGCACCACTTATGAGAGAGAGGATCAGAATTACATTGTATCCACTCGTCATTATCGGGCACCTGAAGTTATCCTTGGACTTGGCTGGAGTTATCCATGTGATGTATGGAGTGTGGGATGTATATTGGTTGAGTTATGCACGGGTGAAGCATTGTTTCAGACTCATGAGAATTTAGAGCACCTTGCCATGATGGAGAGGGTGCTTGGTACATTTCCACAACACATGTTGAAGAGAATTGACCGACATGCCGAGAAGTATGTTAGAAAGGGTAGATTAGACTGGCCAGAGGGTGCAGCCTCAAGGGACAGTATTAAAGCTGTGATGAAGCTTCCCAGGCTACAGAACCTCATCATGCTGCACGTGGATCATTCAGCCGGTGATCTTATACATCTAGTGCAGGGATTACTTCGGTATGACCCCTCTGAAAGACTTACTGCTAAAGAAGCTCTCAGACATTCTTTCTTTAGAGACCACCTTAGGAGATAA 1254 0.4306 MEMERVFEFPHTHMDRRPRKRARLGWDIPEVPKAQVGLFCGQEIENISSYAPSLGPSEHITSSLFAKGIARNGSPPWREDDKDGHYMFAIGDNLTSRYKIHSKMGEGTFGQVLECWDREKKEMVAIKIVRGVKKYREAAMIEIEVLQQLGKHDKGGNRCVQLRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVLMHDLSMIHTDLKPENILLVSPEYVKVPDYKSSSRSPSSYFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDVWSVGCILVELCTGEALFQTHENLEHLAMMERVLGTFPQHMLKRIDRHAEKYVRKGRLDWPEGAASRDSIKAVMKLPRLQNLIMLHVDHSAGDLIHLVQGLLRYDPSERLTAKEALRHSFFRDHLRR 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1049 417 Gene3D Transferase(Phosphotransferase) domain 1 177 416 - -
Lal19g1049 417 ProSiteProfiles Protein kinase domain profile. 98 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal19g1049 417 Pfam Protein kinase domain 98 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal19g1049 417 PANTHER KINASE AFC1 1 417 - -
Lal19g1049 417 Gene3D Phosphorylase Kinase; domain 1 73 176 - -
Lal19g1049 417 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 417 - -
Lal19g1049 417 SUPERFAMILY Protein kinase-like (PK-like) 85 414 IPR011009 -
Lal19g1049 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Lal19g1049 417 SMART serkin_6 98 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal19g1049 417 CDD PKc_CLK 85 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1049 Lal-Chr19 14274945 14278573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1049 251 411 EF-hand Containing Proteins AT5G22840 30.899 1.84e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Lal19g1049 Pkinase 3.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1049 K08287 - gmx:100804452 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1049 19 14274945 14278573 Lal19g1049 19 14274945 14278573 ECH
Lal14g1489 14 15850199 15853767 Lal19g1049 19 14274945 14278573 LSH