Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1047 ATGTCTATCACAACGATGCCTATGTTTAATTCCCTCACATTGGCAGAATCATCTTTATTCTCTCTTCCCTCACTCACCAAATCCAAATACCCATTTATCTCAAATCCTCATAAGCATATAAAGCTTCAAGTTTCATGCTCCTATTCTTCACTCTTTTCGCCCTCTCTTTCTCTCTGCATCAGGAGAACCCACAATTCCCCTGTTGTCACATTTGTAGCACAGACTTCAGATTGGGCTCGGCAAGAAGAGGAAGAAGAAGAAGGTGAAGAGGGAGAACCCACATTGGAAAATCAAGATGCTGATAATGAAAGAGAAGAAGTAGAGGATGCTAAAGATGGGAACTTTGAAGAGAAGGGTTTTGAAGAACCATCTGATGATGCAAAAATCTTTGTTGGGAACTTGCCATTTGATGTTGACAGTGAGAAACTGGCAATGCTTTTTGAGAATGTTGGGACTGTGGAGATTGCTGAGGTCATTTATAATAGGGCGACCGATCAAAGTCGCGGATTTGGATTTGTAACCATGAGTACAGTTGAAGAAGCTGAGAAGGCTGTGGAGAAGTTCAGTGGCTATGATTATAATGGAAGACTCTTGACTGTTAATATTGCTGCTCCAAGAGGAGCAAGGCCTGAGCGTCCACCGCGTGACTTCGATAATACCTTAAGAGTGTATGTTGGTAATTTGCCATGGAGTATTGACAATGCTCGGCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGAATGCTCGGGTAGTGTATGACAGAGAGACTGGTCGATCACGCGGTTTTGGCTTTGTCACATTTTCCAGCGAGGCTGAAATTAATGATGCCATTGCTGCTCTTGATGGTCAGAGCTTGGATGGAAGGGCAATCAGAGTGAATGTTGCTGAGGATAGGCCAAGGCGTGCCTCCTTTTAA 921 0.4343 MSITTMPMFNSLTLAESSLFSLPSLTKSKYPFISNPHKHIKLQVSCSYSSLFSPSLSLCIRRTHNSPVVTFVAQTSDWARQEEEEEEGEEGEPTLENQDADNEREEVEDAKDGNFEEKGFEEPSDDAKIFVGNLPFDVDSEKLAMLFENVGTVEIAEVIYNRATDQSRGFGFVTMSTVEEAEKAVEKFSGYDYNGRLLTVNIAAPRGARPERPPRDFDNTLRVYVGNLPWSIDNARLEQIFSEHGKVENARVVYDRETGRSRGFGFVTFSSEAEINDAIAALDGQSLDGRAIRVNVAEDRPRRASF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1047 306 CDD RRM_HP0827_like 222 298 - -
Lal19g1047 306 SUPERFAMILY RNA-binding domain, RBD 213 303 IPR035979 GO:0003676
Lal19g1047 306 MobiDBLite consensus disorder prediction 80 106 - -
Lal19g1047 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 299 IPR000504 GO:0003723
Lal19g1047 306 PANTHER OS02G0815200 PROTEIN 111 306 - -
Lal19g1047 306 PANTHER OS02G0815200 PROTEIN 1 96 - -
Lal19g1047 306 PANTHER RIBONUCLEOPROTEIN 1 96 - -
Lal19g1047 306 PANTHER RIBONUCLEOPROTEIN 111 306 - -
Lal19g1047 306 MobiDBLite consensus disorder prediction 77 123 - -
Lal19g1047 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 293 IPR000504 GO:0003723
Lal19g1047 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 198 IPR000504 GO:0003723
Lal19g1047 306 SUPERFAMILY RNA-binding domain, RBD 123 215 IPR035979 GO:0003676
Lal19g1047 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 205 IPR000504 GO:0003723
Lal19g1047 306 MobiDBLite consensus disorder prediction 107 123 - -
Lal19g1047 306 SMART rrm1_1 222 295 IPR000504 GO:0003723
Lal19g1047 306 SMART rrm1_1 128 201 IPR000504 GO:0003723
Lal19g1047 306 CDD RRM_HP0827_like 128 205 - -
Lal19g1047 306 Gene3D - 211 305 IPR012677 -
Lal19g1047 306 Gene3D - 72 210 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1047 Lal-Chr19 14254709 14257874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1047 129 306 Eukaryotic Initiation Factors Gene Family AT3G16380 28.492 1.87e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1047 - - hbr:110672501 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1047 19 14254709 14257874 Lal19g1047 19 14254709 14257874 ECH
Lal14g1485 14 15829057 15832226 Lal19g1047 19 14254709 14257874 LSH
Lal19g1047 19 14254709 14257874 Lal21g0756 21 6243998 6247209 PCT
Lal21g0756 21 6243998 6247209 Lal19g1047 19 14254709 14257874 PCT