Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1041 ATGGGTGCTCAAACCATAATTGAACCCTACACTACCCAAGGCTTACCCGAACCAGATGTTTTCATTCACACTTCTGGTGGAACACGCATTCAAGCACACTCAACCATTCTGGCTTCTGTGTCCCCAGTTTTGGAGAACATCATAGACCGACCATGCAAACATCGAAGCTCCGAAAGAATCATCCAAATTCACGGCGTCCCTTGCAACGCCGTGGCCGCCTTCATCAATTTCCTTTACTCCTCCACGTACGATGAGGATGAAATGGACAAGTATGGGATGCACCTGTTGACACTGTCGCATGTGTACAAGGTGCCGAAGTTGAAGCAGAGTTGCATCAAGGGTTTGACTCAGCGGTTAACCGTTGAGAACGTGGTGGACCTGTTGCAACTGGCTAGGCTCTGCGACGCACCGGATCTGTGCGTCAAGTGTATGAAGCTGCTTACCACTCATTTCAAAGCAGTGGAGAAAACAGAGGGATGGGAATTCCTCAACCAGAATGATCCTTGGCTTGAGCTCGAAATCCTTCGCTTCATGGATGAACATGAAACGAGGAAAGAGAAATTGAGGAGGCAGAAGAAGGAACAGGAGCTGTATGCACAACTAGGTGAGGCGATGGAATGTTTGGAACACATATGCAGTGAAGGTTGTACTGATGTTGGACCATGCCACGTGGAGATAAGGAAAGAGAAGAGAAAACCATGCAGCAAATTCTCCACGTGTCAAAGTATTCAGCTCTTGATCTTACATTTTGCCACGTGTAAGAAGAGGATGAACGGAGGGTGCCTACGGTGCAAGCGAATGTGGCAACTCTTCAAACTTCATTCCTACGTTTGTCAACAAACCGATTCCTGCAAGGTTCCTCTTTGCAGGCAAATTCAATTGAAAATGCAACAAGAGAAAAGGAAAGATGATCCAAGGTGGAAACTGCTAGCAAAGAAAGTGGCCTCAGCCAAAGTCATATGCTCATTGTCTTTCCCAAAGAGGAAGAGGGATGAACACATTAGAGTGATGATAAACAATCCTGAGATTAGAACTTTTGAGTTACAATGA 1050 0.461 MGAQTIIEPYTTQGLPEPDVFIHTSGGTRIQAHSTILASVSPVLENIIDRPCKHRSSERIIQIHGVPCNAVAAFINFLYSSTYDEDEMDKYGMHLLTLSHVYKVPKLKQSCIKGLTQRLTVENVVDLLQLARLCDAPDLCVKCMKLLTTHFKAVEKTEGWEFLNQNDPWLELEILRFMDEHETRKEKLRRQKKEQELYAQLGEAMECLEHICSEGCTDVGPCHVEIRKEKRKPCSKFSTCQSIQLLILHFATCKKRMNGGCLRCKRMWQLFKLHSYVCQQTDSCKVPLCRQIQLKMQQEKRKDDPRWKLLAKKVASAKVICSLSFPKRKRDEHIRVMINNPEIRTFELQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1041 349 CDD BACK 120 176 - -
Lal19g1041 349 SUPERFAMILY POZ domain 19 148 IPR011333 -
Lal19g1041 349 Coils Coil 178 198 - -
Lal19g1041 349 SMART TAZ_2 195 290 IPR000197 -
Lal19g1041 349 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 1 347 IPR044513 -
Lal19g1041 349 Pfam BTB/POZ domain 18 118 IPR000210 GO:0005515
Lal19g1041 349 Gene3D - 120 192 - -
Lal19g1041 349 Gene3D Potassium Channel Kv1.1; Chain A 16 119 IPR011333 -
Lal19g1041 349 ProSiteProfiles BTB domain profile. 18 87 IPR000210 GO:0005515
Lal19g1041 349 SUPERFAMILY TAZ domain 194 298 IPR035898 -
Lal19g1041 349 PANTHER BTB/POZ AND TAZ DOMAIN PROTEIN 1 347 - -
Lal19g1041 349 SMART BTB_4 18 119 IPR000210 GO:0005515
Lal19g1041 349 Gene3D TAZ domain 193 300 IPR035898 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1041 Lal-Chr19 14229098 14232981 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Lal19g1041 BTB 1.6e-12 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1041 - - cam:101496955 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1041 19 14229098 14232981 Lal19g1041 19 14229098 14232981 ECH
Lal14g1481 14 15811419 15815505 Lal19g1041 19 14229098 14232981 LSH
Lal19g1041 19 14229098 14232981 Lal4g0752 4 6348046 6351906 PCT
Lal4g0752 4 6348046 6351906 Lal19g1041 19 14229098 14232981 PCT