Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1040 ATGAGTTACATCACAACCACTTCACTCTCTTTCTTATTTCTCCTTTTCTCTTTCCTCACTCTTATTTCCTCTTCACCACTTCAGGACCCTGAATTTGTGGCACAAGAAGTAAACAGGAAAATCAATGGCTCTATTGATAGGAGGAACTTGGGGTACCTCTCATGTGGGACAGGAAACCCCATTGATGATTGTTGGAGATGTGACCCAAGCTGGGAGAAGAATAGACAAAGGCTAGCAGATTGTGCAATTGGGTTTGGAAAAAATGCAATGGGTGGAAAGGGTGGTAAGATTTATGTGGTGACTGACTCTGGTGATGATGACCCTGTGACCCCAAAGCCAGGGACACTTCGTTATGCAGTGATTCAAGATGAGCCATTATGGATCATATTTCAAAGAGACATGGTTATTAAGCTAAAGGAAGAGCTCATAATGAATTCATTCAAAACCATTGATGGAAGAGGTGCTAGTGTACACATTGCTGGTGGTCCATGCATTACTATACAATATGTAACAAATGTTATAGTCCATGGGATTAATATACATGATTGTAAGCAAGGTGGTAATGCTATGGTGAGAGATTCCCCACGGCACTATGGGTGGAGAACCATATCAGATGGTGATGGTGTTTCCATCTTTGGTGGAAGTCACATATGGGTGGATCATTGTTCTTTATCTAATTGCAATGATGGGTTAATTGATGCTATTCATGGGTCCACTGCTATTACCATTTCCAACAATTACATGACACACCATGATAAGGTTATGTTATTGGGTCATAGTGATACATATACTCAAGACAAGAACATGCAAGTCACAATAGCTTTTAATCACTTTGGAGAAGGGCTTGTTCAAAGAATGCCAAGGTGTAGGCATGGATATTTCCATGTGGTGAACAATGACTATACCCACTGGGAAATGTATGCCATAGGGGGAAGTGCTAATCCAACCATCAATAGTCAAGGCAATAGGTTTGTTGCACCCAATGACAGATTCAGCAAAGAGGTAACAAAGCATGAGGATGCACCAGAGAATGAATGGAAAGGGTGGAATTGGAGGTCAGAAGGAGATTTACTAGTAAATGGTGCATTTTTTACAGCTTCAGGTGCTGGAGCTTCATCTAGTTATGCTAGAGCTTCAAGCTTAAGTGCAAGGCCATCTTCTCTTGTAGGGTCCATAACAACTGGTGCTGGTGCACTCAGCTGTAGGAAAGGTTCTCATTGCTGA 1224 0.4167 MSYITTTSLSFLFLLFSFLTLISSSPLQDPEFVAQEVNRKINGSIDRRNLGYLSCGTGNPIDDCWRCDPSWEKNRQRLADCAIGFGKNAMGGKGGKIYVVTDSGDDDPVTPKPGTLRYAVIQDEPLWIIFQRDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIVHGINIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAPENEWKGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALSCRKGSHC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1040 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Lal19g1040 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Lal19g1040 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Lal19g1040 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Lal19g1040 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Lal19g1040 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Lal19g1040 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Lal19g1040 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Lal19g1040 407 PANTHER PECTATE LYASE 18-RELATED 8 404 IPR045032 GO:0030570
Lal19g1040 407 SMART amb_all 133 330 IPR002022 -
Lal19g1040 407 SUPERFAMILY Pectin lyase-like 35 401 IPR011050 -
Lal19g1040 407 Gene3D - 58 400 IPR012334 -
Lal19g1040 407 Pfam Pectate lyase 140 324 IPR002022 -
Lal19g1040 407 PANTHER PECTATE LYASE 8 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1040 Lal-Chr19 14219175 14221662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1040 2 407 Polysaccharide Lyase AT5G63180 80.392 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1040 K01728 - gmx:100101868 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1040 19 14219175 14221662 Lal19g1040 19 14219175 14221662 ECH
Lal14g1480 14 15806079 15808500 Lal19g1040 19 14219175 14221662 LSH
Lal19g1040 19 14219175 14221662 Lal4g0750 4 6283401 6287404 PCT
Lal4g0750 4 6283401 6287404 Lal19g1040 19 14219175 14221662 PCT