Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1039 ATGGCGTCGAGTGAGGGATTTCTGACAGAAGGGCAGAGGGAAATGCTAAAAATTGCCAGTCAAAATGCGGACAATTTGTCTTCATCGCCAAAGTCTCCATCGGCTTTGTTGTCTGAACATCATATAAAAGTTCCCACCGGTGGTAAGGCACAAACTGCTGGGATTGCTGTGAGGCATGTGCGCCGGTCACACTCAGGAAAGTTTGGGCGGGCGAAGAAGGATGGTGCTGGTGGTAAGGGCACTTGGGGAAAATTGCTTGATACTGATGTTGTATCTCACATAGACAGGAATGATCCAAATTATGACAGTGGCGAGGAACCCTATCAGCTGGTTGGTTCTACTGTCACTGACCCCTTGGATGAATTCAAGAAAGCAGTGGCATCCATTATAGAAGAATATTTCAGTACTGGGTCCGTTGAACTGGCTGCATCTGACCTCAGAGAACTTGGCTCAAGTGAATATTATCCATACTTCATTAAGCGCCTTGTATCCATGGCTATGGACAGGCATGACAAGGAGAAAGAAATGGCTTCTGTTCTGCTCTCAGCTTTGTATGCTGATGTCATCAGTCCCGCACAGATTAGGGATGGATTCTTTATGCTCATTGAATCTGCTGATGATCTTGCAGTGGACATACTGGACGCGGTTGACATCATTGCTTTATTCCTGGCTCGTGCTGTTGTTGATGACATCCTTCCTCCTGCCTTTCTAGCCAGGGCAAGGAAGGCTCTTCCAGAATCTTCCAAGGGAGTTCAGGTAATCCAGACTGCTGAGAAGAGTTATCTCTCAGCTCCACACCATGCTGAACTTGTGGAGAGGCGATGGGGTGGTAGCACTCAAATCACTGTTGAGGAAGTAAAGAACAAGATTGCTGATTTACTAAAAGAATATGTGGATAGTGGTGACACACTTGAAGCCTGTAGGTGTATCCGTGAGTTGGGGGTTTCATTCTTCCATCACGAGGTTGTGAAGAAGGCTCTGGTGCTTGCCATGGAGAACCGTTTGGCAGAACCTCTGATGTTGAAACTATTAAAAGAAGCAGCAGAAGAAGGGCTCGTTAGTTCAAGCCAAATGGTGAAAGGGTTTTCTCGTTTGGCAGATGGTCTGGATGATCTTGCTCTTGATATTCCATCAGCTAAAGCCTTGTTCCAGTCATTGGTTCCCAAAGCAATATCTGAAGGATGGCTTGATGCTTCATTCACGAGACCTGCTGGTGAAGATGGGGAAATTCAAGTTGAATATGAGAAGTTGAGGAAGTACAAATGGGAAGCTGTAACTATAATTCATGAGTATTTTCTATCTGATGACATTCCTGATCTCATTCAGAGTCTTGAAGATCTTGGAGCACCTGAATATAACCCAATATTCTTGAAGAAGCTAATAACTCTTGCTATGGACAGAAAGAACAGAGAGAAGGAAATGGCATCTGTACTGCTTTCTGCTCTTCATATTGAGATCTTCTCAACAGAGGATATAGTTAATGGTTTTCTCATGCTTCTGGAAAGTGCTGAAGATACAGCACTGGATATACTTGATGCTTCGAATGAGCTCGCACTGTTTCTAGCCCGGGCTGTGATTGATGATGTGTTGGCCCCTCTGAATCTGGAAGAAATTGGCAGCAGGTTACCACCAAAATGCAGTGGTAGTGAAACTGTGCTAATGGCTCGTTCACTCATTGCTGCTCGTCATGCTGGTGAGAGGCTATTGAGATGCTGGGGTGGTGGGACTGGATGGGCTGTGGAGGATGCCAAGGACAAGATCATGAAGCTCTTAGAGGAGTACGAGAGTAGCGGGGTCTTGGGTGAAGCATGCCAGTGTATACGCGACCTGGGAATGCCTTTCTTTAACCATGAGGTGGTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGAAGAATGATAGGATGCTATATCTACTTCAGGAGTGCTTTAATGAAGGTCTGATCACCATTAATCAGATGACTAAAGGGTTCACCCGTATTAAGGATAGTCTTGATGATCTGGCTTTGGACATTCCGAACGCAAAGGACAAATTTGGCTTCTATGTGGAACATGCCCAGACAAAGGGTTGGTTAGCTTCTTCCATCATTTGA 2091 0.4534 MASSEGFLTEGQREMLKIASQNADNLSSSPKSPSALLSEHHIKVPTGGKAQTAGIAVRHVRRSHSGKFGRAKKDGAGGKGTWGKLLDTDVVSHIDRNDPNYDSGEEPYQLVGSTVTDPLDEFKKAVASIIEEYFSTGSVELAASDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFMLIESADDLAVDILDAVDIIALFLARAVVDDILPPAFLARARKALPESSKGVQVIQTAEKSYLSAPHHAELVERRWGGSTQITVEEVKNKIADLLKEYVDSGDTLEACRCIRELGVSFFHHEVVKKALVLAMENRLAEPLMLKLLKEAAEEGLVSSSQMVKGFSRLADGLDDLALDIPSAKALFQSLVPKAISEGWLDASFTRPAGEDGEIQVEYEKLRKYKWEAVTIIHEYFLSDDIPDLIQSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFLMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSRLPPKCSGSETVLMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESSGVLGEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLYLLQECFNEGLITINQMTKGFTRIKDSLDDLALDIPNAKDKFGFYVEHAQTKGWLASSII 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1039 696 Pfam MA3 domain 424 530 IPR003891 -
Lal19g1039 696 Pfam MA3 domain 287 397 IPR003891 -
Lal19g1039 696 Pfam MA3 domain 584 691 IPR003891 -
Lal19g1039 696 Pfam MA3 domain 122 233 IPR003891 -
Lal19g1039 696 ProSiteProfiles MI domain profile. 121 242 IPR003891 -
Lal19g1039 696 SUPERFAMILY ARM repeat 282 402 IPR016024 -
Lal19g1039 696 SUPERFAMILY ARM repeat 579 695 IPR016024 -
Lal19g1039 696 ProSiteProfiles MI domain profile. 582 696 IPR003891 -
Lal19g1039 696 PANTHER PROGRAMMED CELL DEATH 4 1 693 IPR039778 GO:0045892
Lal19g1039 696 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 1 693 - -
Lal19g1039 696 ProSiteProfiles MI domain profile. 419 540 IPR003891 -
Lal19g1039 696 ProSiteProfiles MI domain profile. 285 406 IPR003891 -
Lal19g1039 696 SUPERFAMILY ARM repeat 419 575 IPR016024 -
Lal19g1039 696 SUPERFAMILY ARM repeat 119 279 IPR016024 -
Lal19g1039 696 Gene3D - 570 696 - -
Lal19g1039 696 Gene3D - 272 403 - -
Lal19g1039 696 SMART ma3_7 122 233 IPR003891 -
Lal19g1039 696 SMART ma3_7 286 397 IPR003891 -
Lal19g1039 696 SMART ma3_7 583 692 IPR003891 -
Lal19g1039 696 SMART ma3_7 420 531 IPR003891 -
Lal19g1039 696 Gene3D - 114 262 - -
Lal19g1039 696 Gene3D - 411 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1039 Lal-Chr19 14200722 14205789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1039 586 682 Eukaryotic Initiation Factors Gene Family AT5G57870 34.000 2.91e-11 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1039 19 14200722 14205789 Lal19g1039 19 14200722 14205789 ECH