Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1037 ATGGCGGAGCCGGAGGTTCTTCCATGGTTGAAATCGATGCCAGTTGCTCCAGAATACCGACCAACCCTAGCAGAGTTCCAAGATCCAATTGGCTACATTTTCAAGATCGAGAAAGAAGCTTCTAGATACGGAATCTGCAAGATCATTCCTCCTGTTCCACCTTGTTCTAAGAAAACCGCTATTTCAAACCTCAACCGCTCTCAACCGTCTTTTACCACGCGCCAGCAGCAGATCGGGTTCTGCCCCCGCCGTGCTCAGCCCGTCCGCCGCCCCGTATGGAAGAGTGGGACCTACTACGCCTTCAAAGAATTCGAAGCCAAAGCCAAAGCGTTCGAGAAAACCTATCTCAAGAAACACTACTCCAAGAAGAGTAATAACAGTGCTGCTATTGCGCCTTCTGCGCTTGAAGTTGAAACGCTCTATTGGAAGGCAACGTTGGATAAACCGTTTTCGGTTGAGTATGCGAATGATATGCCCGGTTCGACTTTCGGTCCAGTGAGCAATGGAGACAGTGTTGGTGGCAGTGCGTGGAACATGAGAGTGGTTTCGAGAGCGAACGGGTCATTGTTGAGGTTTATGAAGGAAGAGATTCCTGGGGTTACTTCACCAATGGTGTATGTGGCTATGTTGTTTAGTTGGTTTGCTTGGCATGTTGAGGATCATGATTTGCATAGTCTTAATTATCTTCATTTCGGGGCTCCGAAAACTTGGTATGGTGTCCCTAGGGATGCTGCATTTGCGTTTGAGGAAGTTGTTAGAGTTCATGGATATGGTGGAGAGGTTAACCCTCTTGTTACTTTTGCAATTCTTGGTGAGAAAACTACAGTGATGCCGCCAGAAGTATTTATTGATGCAGGTGTTCCGTGTTGCAGGTTAGTGCAAAATGCTGGGGAATTTGTTGTGACGTTTCCAGGAGCCTATCACACAGGATTTAGTCATGGTTTTAATTGTGGAGAGGCATCTAACATTGCGACACCCGAATGGTTGAGGGTGGCTAAAGATGCTGCTATTCGCAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGGCCTTGCTTTATGTTCTAGAATCCCTGGGGTAACCAATACTGAACCACAGAGTTCTCGACTTAAGGATAAGAGAAAAGGTGAAGGAGAAACTGTAATCAAAGAGCTATTTGTACAGGACGTGTTACAGAACAATGATATGCTTCATGTACTCAGCAAAGGCTCTGCCATAGTAATTCTTCCTCATAGGTCTTATGACTTTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAACAACTAAAAGTGAACCCTGAGTCCATGAAAGTAGGCTCAAGGGGAGTAAATTATTCAAAGGGTTTGATTTCTGATGACCTGGCTTTTGTCACTAATGATGGAATCAAGCAAGTAAAAGGTTTTTATTCTGTAAAAGAAAAGTTCACTGCACTGTATGAAAGGACCAGGACTTCCTCATTGAGCAAGGTTGGTAACACTTGCACTTCAAGTTCAAAGACATTACAAAAAGACACTGAACAAGAAACAAGTGAAGGAGATGGGTTGTCGGATCAGAGACTATTTTCATGCGTCACATGTGGAATATTAAGCTTTGCCTGTGTTGCTATTGTACAGCCCAGGGAACAAGCAGCTAGATACCTTATGTCAGCTGATTACAGTTTCTTTAATGATTCAATTGCTGGTTCTGGAGTAACTAGCCATGAGTGTACTATTGCTCGTGAAGAATGGACAGAACAGAATGCTCAGAATGATTTATATGATGCTCCTGTTCAATCTGTGAAACAACAGACACAGATTGCGGATCAAAATTATATGGATTCTTTAGATACTGAACCAACAAAAGGCAGTACGGCTCTTTCGTTATTGGCTTCAGCATATGGAGATTCCTCTGACTCTGAGGAAGATCAGGGTGACTCAAATATTGCAGTTGAAGGTGATGAGTTGAACATGATAAATCCTCCATCAGCAAGTAGATCTCAGGAGATATCTTGTTTGCCTTCTCAGTCTCAAGATTTCCATGCCAGTCCCGGGGTTAGACTTGATAGAGGAGATGATATTCCTTCAAAGAGTACTGACAGTTATGAGGATTATATGCATAAGAGGGTTGAGCGCATTCTGAGTCCTTCTGAGTGGTCTGTCAAGTCAGAAGATCATGACATCACTTCAGGGGTTGTATTTAAAAATATGACGACGGTGCCTCATTCCATGTTGAGTTGTCCTCAAGATGTTGAAACATCATTGCTGGGCAAGGCTGTGATTCCTATTGATAAACATGCTTCGTTGGTGCCTCCATCTGATGAAGACTCATCAAGAATGCATGTCTTCTGTCTAGAACATGCTATAGAAGCAGAGCAGCAACTTCGCCCTATAGGAGGAGCACACATATTGCTCCTATGCCATCCAGATTATACCAAGATAGAGGCTGAAGCTAAGCTTGTGGCAGAAGAACTGGGTGTTGATTACACATGGAAGAATACTGCATACAGGCATGCTAATAAAGATGATGAGGAGAGGATCCAATCAGCTCTGGACAGTGAGGAAGCTACTCCTGGGAATGGGGACTGGGCTGTAAAACTGGGAATCAATCTCTTTTATATTGCCAATCTTAGCCGCTCTCCACTTTATAGCAAGCAGATGCCTTACAATTCTGTTATTTATTTTGCATTTGGTTGTAGCTCTCTAGCAAGATCTCCAACAGAACCTAAGGTCTATCGGAGAAGAGGCAACAAGCAGAAAAAGGTGGTTGCTGGTAAATGGTGTGGTAAAGTTTGGATGTCCAATCAAGTCCATCCCCTTTTAGTGAAAGGAGAAGCTGAGGACGTTGAGGATGAGAAAAGCTTGCATGGAAGGCCATTACATGATGTGAAAATTGAGAGATCAGAAGGCATCCACAACAGCAATGCTACTATTAGAAACTCTAGTAGGAAAAGGAAAATGGCGGTAGAGAGTGGCGGATCAAGGAAAGGAAGTTTTGGTGTGAGGGATTGTCTTTCAGATGATTCAATTGAAGATAAATCCAATCAACATCAAAGGAGGATTTTTAGAAGTAAGAGAACCAGGGATACTGAGAAAGGTGATGCAGCTTCAGAGGGGGATTATTCTCCTCTGAAGCATCATAGAAAGCCTTTAAGGAAGCATACAAAATGCATTGAAAGTAATACAATTTCAGATGATCCGCTGGGTGGTAATTCTCATATACAGCACAAGAAGAATGCTAATGCCAAGGAAGCTGAGTTTATTGACAATATTGTGGTTTCAGATGATGCAATGAGTGATGATTCTGATTGCTCTACCAGGGGAGAGCTTAGCAGCAAGCAAGATGCAATTTCAGATGATTCATTGGGTGTTGGTGCTCTTAAGCTGCATAAAAAGACTCCTAAAAGCAAGTACAGCAAATACATTGCTGAAGAAGATGGGATTTCGGATGATGACCAAGTGGAGGTTTGTTTTCAGAAGGAGCAAAGGAGGATACTTAAAAGCAAGCAACGCAAATGCCTTTCTGAAAAAGATACAATGACATTTGATGATCAACTGGCGCACCATGTGCCAAAGCAGCAACAAAAGAATCCTAAAAGCAAAATAGATAAATACCGTGCTGGAGAGGATATTATATCTGATGACCAACCGGAAGTTCCTTCTCGCAAATATCAAAGAAGGATTCCTAAAAACAAGCAAGCCAAATGCATTGCTGGGAAAATTGTAATGTCTGATGGTCAATTGGAGAATCACTTTCAGAAGCACCAAAGGAGTGTTCCTCGCAGCAGGCAAATCAAATGTTGTGATAGAGAAATTATGGATGACAAAATTGAAAGTAATTCTCGTCGGCTGTGTAAAACTCCTAAAAGAAGGCAACCTGAATGCATGGATGAAGAGAATATAAATTCAGATGATCAAACGAGGGATGATTCTCTGCAGCATAGGAGAACTGCTCGAGGTAGGCAATCTAAAGCGCGGACTCTTCAACAAATGAAACAAGTTAAATGCAAGGATGAAGACAGTTCAAATTCAGATGATCAAATGGAGAATGATTCTCAGCAGCAAAGGAGAACTGTTCGAAGTAAGAATTCTAAATCTCAGACTCTTCAACAAATGAAACAAGCTAAATTGAAGGGTGAAGACAATATAAGTTCAGGTGATCAAATGGAGGGTGATTCTCAGCAGCATAGGAGAACTGTTCGGGGTAAGAAATCTAAATCACAGACTCTTCAACAGATGAAACAAGCTAAATGGAAGGATGAAGACAATATCAATTCAGATGATCAAATGGAGGATGATTCTCATCAGCATAGTAAAACTGTTCAGAGTAAGCAATCTAAATCACAGACACTACAACAAATGAAACAAGCTAACTCTGCCCATGGGAGAAAGCAGACATCCCGACCTGTGAAGCGAGGTGCCCAGATGCTAATGAAATCAAAGCCGCCTCGACAAATGAAGCAGCAACCTCGTGTGCAGAATAATCAATCTGAAGAAGAGGAAGAGGAGGATTTGGAGGGGGAGGAAGAACAAGTAGGTGGACCTAGTACACGCCTTAGGAAGAGAGTCCCGAAACTCGAGGAGTCTGAAGAAAAATCAAAAGAAAAGGTAACCAAAAGGAAAAGGGTAAAGAGTGCTACAACTGCAAAGGTTTCAGCCCGGAATGTCAAAATGAAGGACGAGGAAGCAGAGTACCAGTGTGACATTGAGGGGTGTACCATGGGTTTTGGGTCTAAACAAGAGCTGATGCATCATAAGAGAAATATTTGTCCTGTGAAAGGATGCGGCAAGAAGTTTTTCTCACACAAATATCTGGTTCAGCATCGTCGAGTTCATGAGGACGACCGTCCCTTGAAGTGTCCTTGGAAAGGGTGCAAGATGACTTTCAAGTGGGCTTGGGCTCGCACTGAACATATTCGAGTCCACACTGGTGCTCGCCCTTATGCATGTGCTGAGCTGGGTTGTGGACAAACATTCAGATTTGTTTCTGATTTCAGTCGTCACAAGCGAAAGACTGGTCATTCAACAAGGAAAAGTTGTTAA 5043 0.4265 MAEPEVLPWLKSMPVAPEYRPTLAEFQDPIGYIFKIEKEASRYGICKIIPPVPPCSKKTAISNLNRSQPSFTTRQQQIGFCPRRAQPVRRPVWKSGTYYAFKEFEAKAKAFEKTYLKKHYSKKSNNSAAIAPSALEVETLYWKATLDKPFSVEYANDMPGSTFGPVSNGDSVGGSAWNMRVVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHFGAPKTWYGVPRDAAFAFEEVVRVHGYGGEVNPLVTFAILGEKTTVMPPEVFIDAGVPCCRLVQNAGEFVVTFPGAYHTGFSHGFNCGEASNIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRIPGVTNTEPQSSRLKDKRKGEGETVIKELFVQDVLQNNDMLHVLSKGSAIVILPHRSYDFSVCSKLRVGSQQLKVNPESMKVGSRGVNYSKGLISDDLAFVTNDGIKQVKGFYSVKEKFTALYERTRTSSLSKVGNTCTSSSKTLQKDTEQETSEGDGLSDQRLFSCVTCGILSFACVAIVQPREQAARYLMSADYSFFNDSIAGSGVTSHECTIAREEWTEQNAQNDLYDAPVQSVKQQTQIADQNYMDSLDTEPTKGSTALSLLASAYGDSSDSEEDQGDSNIAVEGDELNMINPPSASRSQEISCLPSQSQDFHASPGVRLDRGDDIPSKSTDSYEDYMHKRVERILSPSEWSVKSEDHDITSGVVFKNMTTVPHSMLSCPQDVETSLLGKAVIPIDKHASLVPPSDEDSSRMHVFCLEHAIEAEQQLRPIGGAHILLLCHPDYTKIEAEAKLVAEELGVDYTWKNTAYRHANKDDEERIQSALDSEEATPGNGDWAVKLGINLFYIANLSRSPLYSKQMPYNSVIYFAFGCSSLARSPTEPKVYRRRGNKQKKVVAGKWCGKVWMSNQVHPLLVKGEAEDVEDEKSLHGRPLHDVKIERSEGIHNSNATIRNSSRKRKMAVESGGSRKGSFGVRDCLSDDSIEDKSNQHQRRIFRSKRTRDTEKGDAASEGDYSPLKHHRKPLRKHTKCIESNTISDDPLGGNSHIQHKKNANAKEAEFIDNIVVSDDAMSDDSDCSTRGELSSKQDAISDDSLGVGALKLHKKTPKSKYSKYIAEEDGISDDDQVEVCFQKEQRRILKSKQRKCLSEKDTMTFDDQLAHHVPKQQQKNPKSKIDKYRAGEDIISDDQPEVPSRKYQRRIPKNKQAKCIAGKIVMSDGQLENHFQKHQRSVPRSRQIKCCDREIMDDKIESNSRRLCKTPKRRQPECMDEENINSDDQTRDDSLQHRRTARGRQSKARTLQQMKQVKCKDEDSSNSDDQMENDSQQQRRTVRSKNSKSQTLQQMKQAKLKGEDNISSGDQMEGDSQQHRRTVRGKKSKSQTLQQMKQAKWKDEDNINSDDQMEDDSHQHSKTVQSKQSKSQTLQQMKQANSAHGRKQTSRPVKRGAQMLMKSKPPRQMKQQPRVQNNQSEEEEEEDLEGEEEQVGGPSTRLRKRVPKLEESEEKSKEKVTKRKRVKSATTAKVSARNVKMKDEEAEYQCDIEGCTMGFGSKQELMHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYACAELGCGQTFRFVSDFSRHKRKTGHSTRKSC 1680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1037 1680 MobiDBLite consensus disorder prediction 497 522 - -
Lal19g1037 1680 SUPERFAMILY beta-beta-alpha zinc fingers 1604 1646 IPR036236 -
Lal19g1037 1680 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Lal19g1037 1680 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 1272 1671 - -
Lal19g1037 1680 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 4 1080 - -
Lal19g1037 1680 MobiDBLite consensus disorder prediction 1511 1537 - -
Lal19g1037 1680 MobiDBLite consensus disorder prediction 1415 1440 - -
Lal19g1037 1680 MobiDBLite consensus disorder prediction 657 700 - -
Lal19g1037 1680 ProSitePatterns Zinc finger C2H2 type domain signature. 1620 1642 IPR013087 -
Lal19g1037 1680 MobiDBLite consensus disorder prediction 1001 1045 - -
Lal19g1037 1680 Pfam JmjC domain, hydroxylase 204 322 IPR003347 -
Lal19g1037 1680 Gene3D Classic Zinc Finger 1586 1672 - -
Lal19g1037 1680 SMART cupin_9 171 340 IPR003347 -
Lal19g1037 1680 SMART c2h2final6 1588 1612 IPR013087 -
Lal19g1037 1680 SMART c2h2final6 1565 1587 IPR013087 -
Lal19g1037 1680 SMART c2h2final6 1648 1674 IPR013087 -
Lal19g1037 1680 SMART c2h2final6 1618 1642 IPR013087 -
Lal19g1037 1680 MobiDBLite consensus disorder prediction 660 682 - -
Lal19g1037 1680 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1272 1671 - -
Lal19g1037 1680 PANTHER LYSINE-SPECIFIC DEMETHYLASE 4 1080 - -
Lal19g1037 1680 MobiDBLite consensus disorder prediction 1359 1378 - -
Lal19g1037 1680 MobiDBLite consensus disorder prediction 1208 1225 - -
Lal19g1037 1680 Pfam jmjN domain 17 50 IPR003349 -
Lal19g1037 1680 MobiDBLite consensus disorder prediction 685 700 - -
Lal19g1037 1680 MobiDBLite consensus disorder prediction 1208 1231 - -
Lal19g1037 1680 Gene3D Cupin 9 344 - -
Lal19g1037 1680 ProSiteProfiles Zinc finger C2H2 type domain profile. 1618 1647 IPR013087 -
Lal19g1037 1680 MobiDBLite consensus disorder prediction 497 511 - -
Lal19g1037 1680 ProSiteProfiles Zinc finger C2H2 type domain profile. 1588 1617 IPR013087 -
Lal19g1037 1680 ProSiteProfiles Zinc finger C2H2 type domain profile. 1648 1679 IPR013087 -
Lal19g1037 1680 ProSitePatterns Zinc finger C2H2 type domain signature. 1650 1674 IPR013087 -
Lal19g1037 1680 SUPERFAMILY beta-beta-alpha zinc fingers 1636 1670 IPR036236 -
Lal19g1037 1680 SUPERFAMILY Clavaminate synthase-like 187 340 - -
Lal19g1037 1680 MobiDBLite consensus disorder prediction 972 1052 - -
Lal19g1037 1680 MobiDBLite consensus disorder prediction 1283 1317 - -
Lal19g1037 1680 ProSiteProfiles JmjC domain profile. 171 340 IPR003347 -
Lal19g1037 1680 SMART JmjN_1 15 56 IPR003349 -
Lal19g1037 1680 MobiDBLite consensus disorder prediction 1441 1464 - -
Lal19g1037 1680 MobiDBLite consensus disorder prediction 1283 1548 - -
Lal19g1037 1680 ProSitePatterns Zinc finger C2H2 type domain signature. 1590 1612 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1037 Lal-Chr19 14184809 14194000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1037 779 880 C2H2 Transcription Factor Family AT5G04240 35.294 6.24e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal19g1037 JmjC 2.9e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1037 - - lang:109362418 2681.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1037 19 14184809 14194000 Lal19g1037 19 14184809 14194000 ECH
Lal7g0893 7 15414358 15422341 Lal19g1037 19 14184809 14194000 LSH