Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1035 ATGGAACCCTTTGAATCCGATTCTGTTCTTGTTTCCAATGGTTCTTCTGCCACTGACCCTCATTTGGGTTCTCAATCACCACCATCTTCCATTCATGCTCGCGATCCTGAACCCTCAGATCACAGTCATGTGACCCAGGATGAAGAAGTTGCACTTGGTGCAGAGCTTGAGACCAAGTTGGATTTGAAGGGTGAGAGTGAAGTGGGTTGTGAAACTGAGGATAAAGTTTCGAACTTTGATGATGGGGAACAAGTATGTGATGTGGGTAGTGGTGGTGGTGGTGGTGATGGTGTTATTGAAGTTGAAGAATCTGTTAAGGTGAGTGTTAATGATGGGTTTGGTGAAAATATTAGGGGTTGGGATTGTAATAGTTGGGATGAGGATGTGAATGAGAGTGTGAATGTGAATGAGGGTTTTAATGAGTATGAAGTTGGTGGAGATGATTATGTTGTGAATGATGGTGATTGGGCAGAGGTAGAAGAGAAAATCAGGGGTAGAACTCAACATTACCCTTTAAGGCCTGATGCTGAGGTTTGTGCATATTATATGAAGACAGGGAATTGTAAATTTGGTTTCAATTGCAAGTTTAACCATCCGATCCGACCGAGAAACCAGTCTTTTAAGGATAAGACAGCAGAAAGAGAAGACTCAACAGAAAGATCGAGCCAGACAGAGTGCAAGTATTATCTAAGGTCTGGAGGTTGTAAGTTTGGAAAGGCTTGTAAATATAACCACACAAGGGGAAAATATTCAGCAGCCCCAGTTTCAGAACTTAACTTTCTCGGCCTACCTATTCGTGTGGCATGTGACCTTATTGGAGAGAGAGAGTGCCCCTATTACATGCGAACTGGCTCTTGTAAGTATGGAGCAAGCTGCAAGTTTAATCATCCTGACCCTACAACTATCGGAGGACCAGATTCTCCTTCTGGGTATGGTAATGAAGGGTCAATTTCATTACAAAGTGTATCAAAACCATCTGTATCCTCTTGGTCTCCTCCAAGAACATTAAATGAAACACCTTTTGTGCCAATGCTTTCACCTTCTCAAGGGGTTTCTCCCCGAAGTTCTGATTGGAATGGATATCAGGCACCTATGTACCTATCTGATTGGAGTATGCATCCACCTTCTGCATATGTCATGAGCAATCCAGCAATTGAAACAAATATTTATATGCAACGTCAAAAGCAGGTGCCGGCTGATGACTTCCCAGAGAGGCCTGGTGAACCTGAATGCAGCTACTTCTTAAAAACTGGGGATTGCAAGTTTAAAACTAATTGCAAATTTCACCATCCAAAGAATCGGACTGCAAGATTACCTCCATGCATCCTCAATGACAAGGGTCTTCCTTTGAGGCCTGACCAGAATATCTGTTCACATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAGGTTTGACCACCCGATAGACTTGCAGTCCCCGGTAATTCCAGCATTTGTTGAGCAGCCCTATACAAACTCAGCTAATGTTGAGGTGGCTGGGATGGGTGGAAATGCAGATGCAAGTGATGTGACAATTCAGCATTATGTGTAA 1560 0.4314 MEPFESDSVLVSNGSSATDPHLGSQSPPSSIHARDPEPSDHSHVTQDEEVALGAELETKLDLKGESEVGCETEDKVSNFDDGEQVCDVGSGGGGGDGVIEVEESVKVSVNDGFGENIRGWDCNSWDEDVNESVNVNEGFNEYEVGGDDYVVNDGDWAEVEEKIRGRTQHYPLRPDAEVCAYYMKTGNCKFGFNCKFNHPIRPRNQSFKDKTAEREDSTERSSQTECKYYLRSGGCKFGKACKYNHTRGKYSAAPVSELNFLGLPIRVACDLIGERECPYYMRTGSCKYGASCKFNHPDPTTIGGPDSPSGYGNEGSISLQSVSKPSVSSWSPPRTLNETPFVPMLSPSQGVSPRSSDWNGYQAPMYLSDWSMHPPSAYVMSNPAIETNIYMQRQKQVPADDFPERPGEPECSYFLKTGDCKFKTNCKFHHPKNRTARLPPCILNDKGLPLRPDQNICSHYSRYGICKFGPACRFDHPIDLQSPVIPAFVEQPYTNSANVEVAGMGGNADASDVTIQHYV 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1035 519 MobiDBLite consensus disorder prediction 311 333 - -
Lal19g1035 519 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 177 199 IPR000571 GO:0046872
Lal19g1035 519 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 297 IPR000571 GO:0046872
Lal19g1035 519 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 454 477 IPR000571 GO:0046872
Lal19g1035 519 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 407 432 IPR000571 GO:0046872
Lal19g1035 519 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 224 245 IPR000571 GO:0046872
Lal19g1035 519 ProSiteProfiles Zinc finger C3H1-type profile. 451 479 IPR000571 GO:0046872
Lal19g1035 519 SUPERFAMILY CCCH zinc finger 449 477 IPR036855 GO:0046872
Lal19g1035 519 PANTHER PROTEIN PHOSPHATASE RELATED 13 518 - -
Lal19g1035 519 MobiDBLite consensus disorder prediction 8 32 - -
Lal19g1035 519 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 13 518 - -
Lal19g1035 519 SUPERFAMILY CCCH zinc finger 410 434 IPR036855 GO:0046872
Lal19g1035 519 ProSiteProfiles Zinc finger C3H1-type profile. 173 201 IPR000571 GO:0046872
Lal19g1035 519 ProSiteProfiles Zinc finger C3H1-type profile. 220 248 IPR000571 GO:0046872
Lal19g1035 519 MobiDBLite consensus disorder prediction 1 46 - -
Lal19g1035 519 SMART c3hfinal6 173 200 IPR000571 GO:0046872
Lal19g1035 519 SMART c3hfinal6 220 247 IPR000571 GO:0046872
Lal19g1035 519 SMART c3hfinal6 273 298 IPR000571 GO:0046872
Lal19g1035 519 SMART c3hfinal6 451 478 IPR000571 GO:0046872
Lal19g1035 519 SMART c3hfinal6 405 432 IPR000571 GO:0046872
Lal19g1035 519 Gene3D - 150 211 - -
Lal19g1035 519 ProSiteProfiles Zinc finger C3H1-type profile. 271 299 IPR000571 GO:0046872
Lal19g1035 519 SUPERFAMILY CCCH zinc finger 275 298 IPR036855 GO:0046872
Lal19g1035 519 Gene3D - 451 498 - -
Lal19g1035 519 Gene3D - 373 442 - -
Lal19g1035 519 Gene3D - 214 304 - -
Lal19g1035 519 MobiDBLite consensus disorder prediction 303 333 - -
Lal19g1035 519 SUPERFAMILY CCCH zinc finger 223 250 IPR036855 GO:0046872
Lal19g1035 519 ProSiteProfiles Zinc finger C3H1-type profile. 405 433 IPR000571 GO:0046872
Lal19g1035 519 SUPERFAMILY CCCH zinc finger 172 201 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1035 Lal-Chr19 14174337 14181086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1035 167 480 C2H2 Transcription Factor Family AT3G02830 39.645 4.71e-71 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal19g1035 zf-CCCH 2.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1035 - - gmx:100786894 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1035 19 14174337 14181086 Lal19g1035 19 14174337 14181086 ECH