Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1022 ATGGACTGGAATTTGAAGTCACCTTCTTTGGATTTGACTGAAGTGGATCAAGGAACAACTTTTCCAAACATGGAAACAGTGGATGAAGAAGGGTCAAGCAGGTTTGGTGTTTATAGAACAAAAGGTGAATTTTCTGTGGACTTGAAACTTGGCCAAGTTGGGAATTTTGGCATAGAATCAGTGATAGCCAAGCCCAAAGATACTTATGCTGCTGCTGCTGCTGCTGGAGTATCTAAAATGGCATCTTCACCTTCAGGGTCATCTAAGAGAGCTAGAGCCTTTAACAATGGTAATCACATAGTGACATGCCTTGTGGATGAGTGCAAATCAGATCTTAGTAACTGCAGAGACTATCATAGGCGCCATAAGGTTTGTGAACTTCATTCCAAGACTCCACAGGTCTCAATTGGTGGCCAGAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAAGGAAAAAGAAGCTGCAGAAAACGCTTAGATGGACACAACAGAAGGAGAAGAAAGCCTCAACCAGAATCACTCACACGTTCTAGTAATTTTTTGTCCAATTACCAAGGTACCCAATTGCTACCATTCTCAAGTTCACACATATACTATTCCACTGCTATGGTGAATCCTGCATGGAATGGAGTTGTTACTTCCAATGCAGATGTTAGGCTCCAAAGCCAAAACCAACACCAACAAGTGAATTTCATAGAAAAACAAGACCTTTTTCTTGGATCTTCCCCAACCAGCTACAAAGAAGGGAAGCAACTTGCATTCTTACAAGGTGATCATCACAACCAAAACACACATCATCTTCAAACACTTCTCAGAACTAGCCCTTACTCAGAAAGTAGTGGAGGGTTGAGAAGCAAAATGTTCTTTGATAATAATAGCCTAACAAGTTCAGTTCATGAATCTCCTTGTGCTCTCTCTCTTCTGTCATCACCACAAGTACACAACAATCTTGGAAATGGATTGAACCAAATGGTGCAGCCTCACTCATCATCACTTATTATGCAACCCTTAGAACTGAGCCTGCATGATAATAATAATAATAATAGTAACATGGAATCTGTGGACCCAGTTTTGGATCCTAATGGTAGTGACCATTGTTCATCAATGTATAACATTGGTTCTAATGGATCACAGGGTAGTGATGCCCCTCAACTATTTCCATTTCAATGGGAATAG 1200 0.4092 MDWNLKSPSLDLTEVDQGTTFPNMETVDEEGSSRFGVYRTKGEFSVDLKLGQVGNFGIESVIAKPKDTYAAAAAAGVSKMASSPSGSSKRARAFNNGNHIVTCLVDECKSDLSNCRDYHRRHKVCELHSKTPQVSIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPESLTRSSNFLSNYQGTQLLPFSSSHIYYSTAMVNPAWNGVVTSNADVRLQSQNQHQQVNFIEKQDLFLGSSPTSYKEGKQLAFLQGDHHNQNTHHLQTLLRTSPYSESSGGLRSKMFFDNNSLTSSVHESPCALSLLSSPQVHNNLGNGLNQMVQPHSSSLIMQPLELSLHDNNNNNSNMESVDPVLDPNGSDHCSSMYNIGSNGSQGSDAPQLFPFQWE 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1022 399 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 6 399 IPR044817 GO:0003677
Lal19g1022 399 MobiDBLite consensus disorder prediction 167 186 - -
Lal19g1022 399 Gene3D - 94 164 IPR036893 GO:0003677|GO:0005634
Lal19g1022 399 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 6 399 - -
Lal19g1022 399 ProSiteProfiles Zinc finger SBP-type profile. 100 177 IPR004333 GO:0003677
Lal19g1022 399 SUPERFAMILY SBT domain 101 182 IPR036893 GO:0003677|GO:0005634
Lal19g1022 399 Pfam SBP domain 103 176 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1022 Lal-Chr19 14077846 14082071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1022 1 399 SBP-box Gene Family AT5G50670 40.855 1.14e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal19g1022 SBP 5.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1022 - - gmx:100806507 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1451 14 15646268 15650480 Lal19g1022 19 14077846 14082071 LSH
Lal7g0874 7 15293022 15296263 Lal19g1022 19 14077846 14082071 LSH