Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1011 ATGAACAAGGTGAATTTTGTGAAAAATGGAATAAGCAAGTTGCCACCAGGTTTTCGTTTCCAACCAACAGATGAAGAGCTTGTGTTTCAATACTTGAAATGTAAGGTCTTTTCATATCCATTGCCTGCTACTATCATTCCTGAGATCAATGTCTGCAACTATGATCCTTCGGATTTGCCAGGAAACTGTGAAGAGAGGTACTTTTTCAGCTCAAAGGACACTAAGTATCGAAATGGTAATCGTATGAACCGAACAACCAACTGTGGCTATTGGAAAGCATCAGGAAAAGACAAGAGAATCTCAACTTCAACCTGTGATGGCATTGTTGGGATAAGAAAAACTCTCGTTTTCTATGAAGGCAAATCTCCAAATGGATCTAGAACTAATTGGGTTTTGCATGAATATCGCCTTGTCACTATAGAAAACAATTACGTGAATGAGATAGGAGATTGGGTTCTATGTCGCTTATTGATGAAGAAAAGAAGTATAATAGAAAGTGATGATAGCACCAGTCACATGCATAAAAGAAACACAGTACGAGGTTTTCCAAGGTTGTTTGATTTTATGATGGTAAGCAAGAGTGCACATTCTTCAACATCATCATCATCATGTTCGAGTTCCAGCAATAATAACATAGAGGTGTCTTCAAATGCATTAGACCATGAGGAAACAAGTGGCTATGCTGATTTTTAA 693 0.3766 MNKVNFVKNGISKLPPGFRFQPTDEELVFQYLKCKVFSYPLPATIIPEINVCNYDPSDLPGNCEERYFFSSKDTKYRNGNRMNRTTNCGYWKASGKDKRISTSTCDGIVGIRKTLVFYEGKSPNGSRTNWVLHEYRLVTIENNYVNEIGDWVLCRLLMKKRSIIESDDSTSHMHKRNTVRGFPRLFDFMMVSKSAHSSTSSSSCSSSSNNNIEVSSNALDHEETSGYADF 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1011 230 Pfam No apical meristem (NAM) protein 15 137 IPR003441 GO:0003677|GO:0006355
Lal19g1011 230 Gene3D NAC domain 23 164 IPR036093 GO:0003677|GO:0006355
Lal19g1011 230 SUPERFAMILY NAC domain 10 159 IPR036093 GO:0003677|GO:0006355
Lal19g1011 230 MobiDBLite consensus disorder prediction 198 222 - -
Lal19g1011 230 ProSiteProfiles NAC domain profile. 14 159 IPR003441 GO:0003677|GO:0006355
Lal19g1011 230 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 230 - -
Lal19g1011 230 MobiDBLite consensus disorder prediction 198 230 - -
Lal19g1011 230 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1011 Lal-Chr19 13974574 13976692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1011 1 162 NAC Transcription Factor Family AT5G13180 61.963 2.87e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal19g1011 NAM 6.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1011 - - gmx:100812015 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1011 19 13974574 13976692 Lal7g0864 7 15201668 15203828 ECH
Lal13g1554 13 15330897 15333476 Lal19g1011 19 13974574 13976692 ECH
Lal24g1195 24 13193140 13195380 Lal19g1011 19 13974574 13976692 ECH
Lal19g1011 19 13974574 13976692 Lal19g1011 19 13974574 13976692 ECH
Lal14g1434 14 15554391 15556209 Lal19g1011 19 13974574 13976692 LSH
Lal7g0864 7 15201668 15203828 Lal19g1011 19 13974574 13976692 LSH