Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1009 ATGTCAGCTTTTTCTTACCAATACCATCCCTTTCTTGTTGACCCTGCATTCATTCCCAACACTCCTATCATCATGTCTTCTTTGACTCATCACAAACAATCCCATATAAACACTACCCTTCCTTCTTATCATTTTCATCTTCTTCAAACAAACCAACAAACTAGTTCTGTTGATCATAGCTCCAAAGTTAGTACTATCAGTGACTATAGTCCTGAGTCCTCAATGGTTGTGGATAAGCTTGAAAACGGTGAACAGGTTAATCAGAATGTGTCTTCTATGGAGAAGAAGAAGAGAAGAATTAGAAATGGGTCTCCCTTGATTATCTCTCACTCTAAGGAATCAAGAGAAGGGAGAAACAAGAAGCAAAAGAAGAGGAATGATGAGGTGAAAGAAGAAGAAAAGCCAAAAGAAGAGAAGAAGGTTGAAAAAGAAGGTTCAGAAGAGCCTCCAAAAGGCTATATCCACGTCAGAGCAAGAAGGGGTCAAGCAACAGATAGCCACAGCCTTGCTGAGAGGGTAAGAAGGGAGAAAATAAGTGAAAGGATGAACATGTTGCAGAAACTTGTGCCAGGCTGTGATAAGGTAACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCCCTACAGAATCAAGTGGAGTTCTTGTCAATGAAGCTTGCTTCTGTGAATCCAATGTTCTTTAACTTGGCTATAGACCTAGACCTAGATACCCCAATGGTTCTACCAGAGAAATTAAATAGCATAGTATCACCAACCCCACCACTATCATATGTACCACAATGCAGCTTGAACCAGTCATCACCTTTTGCTGATACAACCACCATAGCCACCAACAACAACACTGGTTTCCATGCTGCTAATGACTATCTTTTGGATTATGCTTTTCTTCAAGAGCAAAGGTCAACTTTCTTCTCTGAGTATAGTGGAGGTCAATTCTGGGACGTGGAAGACCAACGACAAAAGTTTCTTAGTCCATATGGATTCGGCAATGACTCATGTTCCTTAAATTAA 1023 0.4018 MSAFSYQYHPFLVDPAFIPNTPIIMSSLTHHKQSHINTTLPSYHFHLLQTNQQTSSVDHSSKVSTISDYSPESSMVVDKLENGEQVNQNVSSMEKKKRRIRNGSPLIISHSKESREGRNKKQKKRNDEVKEEEKPKEEKKVEKEGSEEPPKGYIHVRARRGQATDSHSLAERVRREKISERMNMLQKLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFFNLAIDLDLDTPMVLPEKLNSIVSPTPPLSYVPQCSLNQSSPFADTTTIATNNNTGFHAANDYLLDYAFLQEQRSTFFSEYSGGQFWDVEDQRQKFLSPYGFGNDSCSLN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1009 340 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 340 IPR024097 GO:0006355
Lal19g1009 340 SMART finulus 168 218 IPR011598 GO:0046983
Lal19g1009 340 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
Lal19g1009 340 CDD bHLH_AtBPE_like 152 233 - -
Lal19g1009 340 Gene3D - 159 230 IPR036638 GO:0046983
Lal19g1009 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Lal19g1009 340 Coils Coil 112 132 - -
Lal19g1009 340 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 340 - -
Lal19g1009 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 229 IPR036638 GO:0046983
Lal19g1009 340 MobiDBLite consensus disorder prediction 79 169 - -
Lal19g1009 340 MobiDBLite consensus disorder prediction 111 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1009 Lal-Chr19 13958503 13962239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1009 1 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 44.944 2.26e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal19g1009 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1009 - - gmx:100796018 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1009 19 13958503 13962239 Lal19g1009 19 13958503 13962239 ECH
Lal7g0859 7 15158885 15162781 Lal19g1009 19 13958503 13962239 LSH